Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Mar 1;23:101064. doi: 10.1016/j.genrep.2021.101064

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2021 Elsevier Inc. All rights reserved.

Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

PMC Copyright notice

Fig. 3 — Visualization of the genomic sequences showing the alignment and genetic variants.

(a) This shows 23406A>G using NCBI msa viewer (this is the dataset S₅ (this is only partial view showing position 23354 to position 23463 with a sample of 30 genomes).

(b) Visualization of the multiple sequence alignment (using Jalview tool).

(c) S1c-100-genome (aligned with clustal msa)>>partial view with Jalview.

Note: Y is C or T; R is A or G; W is A or T.

Note: (a) is courtesy of the US National Center for Biotechnology Information NCBI. (b) and (c) are courtesy of Jalview tool (Waterhouse et al., n.d.): https://www.jalview.org/.