Table 6.
Percentage of 13 genetic variants across ten sets of genomes. Each row represents on set of genomes (~about 100 genomes in each set). The 13 genetic variants are shown as column headers 1…13.
| 1 |
2 |
3 |
4 |
5 |
6 |
7 |
8 |
9 |
10 |
11 |
12 |
13 |
||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241t>c | 1059c>t: 19% | 3037c>t | 8782C>T in ORF1ab gene | 11083g>t | 14408c>t | 17747c>t | 17858a>g | 18060c>t | 23406a>g in S gene | 25566g>t in orf3a | 28144T>C in ORF8 gene | 29095C>T | ||
| 1 | S1 | 0% | 0% | 0% | 35% | 6% | 0% | 0% | 0% | 6% | 0% | 0% | 35% | 18% |
| 2 | S2 | 232t>c: 10% | 1060c>t: 3% | 3% 3037t>c | 8798c>t: 39% | 1% 11069 | 10% 14407c>t | 6% 17749c>t | 10% 17836 | 0% | 0% | 0% | 28192t>c: 42% | 29143c>t: 23% |
| 3 | S3 | 0% | 0% | 0% | 8785c>t: 30% | 4% 11086 | 0% | 0% | 0% | 6%: 18063 | 0% | 0% | 28147t>c: 30% | 29098c>t: 9% |
| 4 | S4 | 9% | 1071: 2% | 3045: 5% | 8790: 29% | 11091t>g: 46% | 5% | 17755: 14% | 17868: 14% | 18068: 14% | 23414: 5% | 0% | 28155: 29% | 0% |
| 5 | S5 | 18%: 241c>t | 10% | 15% | 46% | 35% | 15% | 34% | 34% | 37% | 15% *1 | 11% | 46% (28147) | 0% |
| 6 | S6 | 13% | 32% 1059t>c | 13% t>c | 9% | 4% | 13% 14408t>c | 1% | 3% | 3% | 13% 23403 | 28% 25563t>g | 9% | 0% |
| 7 | S7 | 37% | 34% | 41% | 17% | 6% | 37% t>c | 15% | 14% | 14% | 37% g>a | 47% 25563t>g | 17% | 0% |
| 8 | S8 | 46% | 19% | 46% t>c | 12% | 3% | 46% t>c | 6% | 6% | 6% | 46% 23403g>a | 33% 25563g>t | 12% | 1% |
| 9 | S9 | 11.7% 241 t>c | 1163 a>t 10% | 8.60% | 7% | 0% (zero) | 14408t>c: 14% | 1.60% | 17858 1.6% | 1.60% | 23403: 8.6% | 25563: 48.44% | 4.70% | 0% |
| 10 | S10 | 19% | 11% | 17% t>c | 8% | 15% | 17% t>c | 4% | 4% | 4% | 23403: 17% | 32% | 6% | 11% |