Skip to main content
. 2021 Jan 8;44(1):e20200172. doi: 10.1590/1678-4685-GMB-2020-0172

Table 1 - . Characteristics of the genome sequences of four different R. solanacearum strains of the Moko ecotype from Brazil.

Features CCRMRs277a CCRMRs287b CCRMRs304c CCRMRsB7d
Coverage 133 148 129.8 163
Size before alignment (bp) 5.659.851 5.464.210 5.654.054 5.847.640
GC content (%) 66.54 66.59 66.55 66.46
Number of contigs 360 92 368 88
N50 43.891 150.675 45.590 216.010
BUSCO (%) 97.97 98.65 97.97 97.97
Size after alignment (bp) 5.636.326 5.444.697 5.645.239 5.854.658
Chrome Plasmidf Chrom Plasmid Chrom Plasmid Chrom Plasmid
References strains PO82g UW163h UW163g UW163h PO82g UW163h PO82h UW163h
Size after alignment (bp) 3.549.795 2.086.531 3.512.030 1.932.667 3.549.663 2.095.576 3.716.474 2.138.184
Coding sequences 3.099 1.718 3.315 1.669 3.070 1.720 3.521 1.750
Subsytems number 299 81 318 83 291 88 321 93
RNAs 46 1 52 1 45 1 51 4
a

- CCRMRs277 = sequevar IIA-24; b- CCRMRs287 = sequevar IIB-4; c- CCRMRs304 = sequevar IIA-24; d- CCRMRsB7 = sequevar IIB-25.

e

- Chromosome;

f

- Megaplasmid;

g

- NUCmer alignment algorithm;

h

-PROmer alignment algorithm.