Table 3.
Alignment results of each sample
| Samples | Total readsa | Mapped readsb | Uniq. mapped readsc | Multiple map. readsd | Reads map to ‘+’e | Reads map to ‘–’f |
|---|---|---|---|---|---|---|
| d-0-1 | 58,613,254 | 56,475,681 (96.35%) | 50,859,528 (86.77%) | 5,616,153 (9.58%) | 25,981,307 (44.33%) | 26,076,507 (44.49%) |
| d-0-2 | 59,403,390 | 57,299,237 (96.46%) | 51,049,269 (85.94%) | 6,249,968 (10.52%) | 26,071,598 (43.89%) | 26,139,723 (44.00%) |
| d-0-3 | 49,147,830 | 47,414,092 (96.47%) | 42,500,765 (86.48%) | 4,913,327 (10.00%) | 21,732,380 (44.22%) | 21,786,530 (44.33%) |
| d-1-1 | 85,549,876 | 82,325,825 (96.23%) | 74,360,476 (86.92%) | 7,965,349 (9.31%) | 38,336,236 (44.81%) | 38,490,739 (44.99%) |
| d-1-2 | 94,713,792 | 91,639,498 (96.75%) | 81,994,693 (86.57%) | 9,644,805 (10.18%) | 42,254,746 (44.61%) | 42,390,965 (44.76%) |
| d-1-3 | 95,265,846 | 92,379,516 (96.97%) | 81,663,964 (85.72%) | 10,715,552 (11.25%) | 42,047,639 (44.14%) | 42,154,318 (44.25%) |
| d-3-1 | 83,384,130 | 80,785,406 (96.88%) | 71,651,204 (85.93%) | 9,134,202 (10.95%) | 36,970,139 (44.34%) | 37,058,529 (44.44%) |
| d-3-2 | 89,924,080 | 87,153,989 (96.92%) | 77,696,003 (86.40%) | 9,457,986 (10.52%) | 39,952,614 (44.43%) | 40,064,092 (44.55%) |
| d-3-3 | 83,617,608 | 81,334,162 (97.27%) | 71,806,277 (85.87%) | 9,527,885 (11.39%) | 36,949,431 (44.19%) | 37,014,840 (44.27%) |
| d-7-1 | 104,807,774 | 101,706,283 (97.04%) | 89,439,347 (85.34%) | 12,266,936 (11.70%) | 46,119,278 (44.00%) | 46,223,712 (44.10%) |
| d-7-2 | 89,784,862 | 86,469,953 (96.31%) | 78,051,494 (86.93%) | 8,418,459 (9.38%) | 40,087,913 (44.65%) | 40,143,735 (44.71%) |
| d-7-3 | 87,132,160 | 84,256,540 (96.70%) | 74,469,393 (85.47%) | 9,787,147 (11.23%) | 38,286,864 (43.94%) | 38,382,981 (44.05%) |
| d-10-1 | 92,145,940 | 89,221,639 (96.83%) | 81,900,144 (88.88%) | 7,321,495 (7.95%) | 42,120,068 (45.71%) | 42,160,622 (45.75%) |
| d-10-2 | 106,682,296 | 102,682,416 (96.25%) | 92,480,400 (86.69%) | 10,202,016 (9.56%) | 47,660,016 (44.67%) | 47,779,175 (44.79%) |
| d-10-3 | 100,138,522 | 96,653,596 (96.52%) | 87,175,782 (87.06%) | 9,477,814 (9.46%) | 44,725,983 (44.66%) | 44,860,821 (44.80%) |
| d-15-1 | 94,240,382 | 90,680,881 (96.22%) | 80,900,655 (85.84%) | 9,780,226 (10.38%) | 41,755,839 (44.31%) | 41,819,200 (44.38%) |
| d-15-2 | 83,510,198 | 79,354,215 (95.02%) | 70,468,299 (84.38%) | 8,885,916 (10.64%) | 36,144,364 (43.28%) | 36,222,735 (43.38%) |
| d-15-3 | 85,290,260 | 81,572,791 (95.64%) | 73,292,073 (85.93%) | 8,280,718 (9.71%) | 37,623,305 (44.11%) | 37,700,361 (44.20%) |
aNumber of reads of clean data, not paired-end reads
bNumber of reads mapped to the reference genome and the percentage in clean reads
cNumber of reads mapped uniquely (Uniq.) to the reference genome and the percentage in clean reads
dNumber of reads multiply mapped (map.) to the reference genome and the percentage in clean reads
eNumber of reads mapped to the sense chain and the percentage in clean reads
fNumber of reads mapped to the anti-sense chain and the percentage in clean reads