Table 2.

Differentially abundant phyla and genera between CF and WT groups.

Taxon	CF Relative Abundance (%) (mean ± SD)	WT Relative Abundance (%) (mean ± SD)	Mean Difference (%) (CF − WT)	p-Value	FDR
Phylum
Firmicutes	24.234 ± 3.975	41.307 ± 11.565	−17.073	0.002	0.023
Saccharibacteria	0.001 ± 0.003	0.081 ± 0.075	−0.08	0.010	0.035
Bacteroidetes	45.023 ± 10.483	27.355 ± 11.337	17.669	0.035	0.087
Cyanobacteria	0.008 ± 0.012	0.071 ± 0.076	−0.063	0.047	0.095
Genus
Bacteroides	37.115 ± 12.404	17.673 ± 12.282	19.442	0.008	0.060
Blautia	2.997 ± 1.147	0.67 ± 1.118	2.327	0.008	0.060
Oscillospira	1.392 ± 0.718	3.517 ± 1.347	−2.125	0.005	0.060
Roseburia	0 ± 0	0.02 ± 0.023	−0.02	0.006	0.060
Ruminococcus	2.384 ± 1.836	7.777 ± 3.881	−5.392	0.008	0.060
Holdemania	0.06 ± 0.04	0.015 ± 0.015	0.045	0.014	0.086
Dehalobacterium	0.012 ± 0.029	0.08 ± 0.063	−0.069	0.017	0.089