Table 3.

Evidence rs10852375 and rs352214 are eQTLs in brain tissues.

Tissue	rsID	GENE	SYMBOL	A1	A2	B	P	FDR
TCX	rs352214	ENSG00000259366	.	C	G	−0.2201	1.02E-02	3.23E-01
TCX	rs352214	ENSG00000279302	MIR3622A	C	G	−0.1821	4.32E-02	5.78E-01
DLPFC	rs352214	ENSG00000147419	CCDC25	C	G	−0.2001	6.15E-04	1.51E-02
DLPFC	rs352214	ENSG00000120875	DUSP4	C	G	−0.1877	1.65E-03	3.44E-02
DLPFC	rs352214	ENSG00000104290	FZD3	C	G	−0.7323	1.65E-38	2.10E-35
DLPFC	rs352214	ENSG00000279302	MIR3622A	C	G	−0.1268	3.85E-02	3.24E-01
CER	rs10852375	ENSG00000261819	.	A	T	−0.2354	6.41E-03	2.51E-01
CER	rs10852375	ENSG00000091262	ABCC6	A	T	0.1835	3.33E-02	5.33E-01
CER	rs10852375	ENSG00000133393	FOPNL	A	T	−0.1877	2.92E-02	5.10E-01
CER	rs10852375	ENSG00000179889	PDXDC1	A	T	−0.1998	2.05E-02	4.44E-01
TCX	rs10852375	ENSG00000085721	RRN3	A	T	−0.1831	3.36E-02	5.83E-01
DLPFC	rs10852375	ENSG00000270580	.	A	T	−0.1260	3.42E-02	3.61E-01
DLPFC	rs10852375	ENSG00000227827	AC138969.2	A	T	0.1915	1.20E-03	3.50E-02
DLPFC	rs10852375	ENSG00000183426	NPIPA1	A	T	−0.1833	1.79E-03	4.87E-02
DLPFC	rs10852375	ENSG00000183793	NPIPA5	A	T	0.2798	2.54E-06	1.60E-04
DLPFC	rs10852375	ENSG00000179889	PDXDC1	A	T	−0.1736	3.63E-03	8.42E-02

All results from the AMP-AD studies study where the evidence for an eQTL was nominally significant (P < 0.05; https://www.synapse.org/#!Synapse:syn17015233). Results with FDR < 0.05 are highlighted in bold font. A1: allele 1, A2: allele 2, β: beta coefficient from regression model, FDR: false discovery rate, CER: cerebellum from Mayo study, DLPFC: dorsolateral prefrontal cortex from ROSMAP study, TCX: temporal cortex from Mayo study.