TABLE 2.
The top 10 significantly upregulated and downregulated predicted genes in the Starved treatment with log2 fold changes greater than 1 (means), along with their KEGG annotations (listed in order of q-value followed by log2 fold change).
| KEGG orthology | log2 fold change | q-value | Gene description | KEGG BRITE functional classifications |
| K14448 | 1.92 | 3.93E-31 | (2S)-methylsuccinyl-CoA dehydrogenase | Carbohydrate metabolism; Glyoxylate and dicarboxylate metabolism; Microbial metabolism in diverse environments |
| K03851 | 1.95 | 2.33E-29 | taurine-pyruvate aminotransferase | Metabolism of other amino acids; Taurine and hypotaurine metabolism |
| K04036 | 1.88 | 2.33E-29 | divinyl protochlorophyllide a 8-vinyl-reductase | Metabolism of cofactors and vitamins; Porphyrin and chlorophyll metabolism |
| K14451 | 2.03 | 2.73E-29 | (3S)-malyl-CoA thioesterase | Carbohydrate metabolism; Glyoxylate and dicarboxylate metabolism; Microbial metabolism in diverse environments |
| K09847 | 2.01 | 2.56E-27 | spheroidene monooxygenase | Metabolism of terpenoids and polyketides; Carotenoid biosynthesis |
| K08927 | 1.62 | 5.14E-24 | light-harvesting complex 1 beta chain | Environmental Information Processing; Signal transduction |
| K14083 | 1.32 | 6.37E-26 | trimethylamine—corrinoid protein Co-methyltransferase | Methane metabolism; Energy metabolism; Microbial metabolism in diverse environments/methanogenesis |
| K05915 | 1.78 | 7.62E-26 | (hydroxymethyl)phosphonate/2-amino-1-hydroxyethylphosphonate | Metabolism of other amino acids; Phosphonate and phosphinate metabolism |
| K14449 | 1.60 | 3.08E-25 | 2-methylfumaryl-CoA hydratase | Carbohydrate metabolism; Glyoxylate and dicarboxylate metabolism; Microbial metabolism in diverse environments |
| K07772 | −1.35 | 9.39E-24 | two-component system, OmpR family, torCAD operon response regulator TorR | Environmental Information Processing; Signal transduction |
| K03346 | −1.00 | 2.33E-13 | Replication initiation and membrane attachment protein | Genetic information processing; DNA replication proteins |
| K12269 | −2.43 | 2.11E-11 | Accessory secretory protein Asp2 | Signaling and cellular processes; Secretion system |
| K12270 | −2.32 | 3.16E-11 | Accessory secretory protein Asp3 | Signaling and cellular processes; Secretion system |
| K07683 | −1.65 | 3.27E-11 | Two-component system, NarL family, sensor histidine kinase NreB | Environmental Information Processing; Two-component system, NarL family, sensor histidine kinase NreB |
| K02828 | −1.30 | 3.88E-11 | Cytochrome aa3-600 menaquinol oxidase subunit III | Energy metabolism; Cytochrome aa3-600 menaquinol oxidase subunit III |
| K03697 | −1.04 | 4.97E-11 | ATP-dependent Clp protease ATP-binding subunit ClpE | Genetic information processing; Chaperones and folding catalysts |
| K10984 | −1.03 | 5.08E-11 | Galactosamine PTS system EIIB component | Carbohydrate metabolism; Galactose metabolism |
| K02245 | −1.02 | 5.98E-11 | Competence protein ComGC | Signaling and cellular processes; Type II secretion system |
| K02240 | −1.02 | 5.98E-11 | Competence protein ComFA | Signaling and cellular processes; Type II secretion system |
| K07570 | −1.01 | 6.44E-11 | General stress protein 13 | Genetic information processing; Translation |