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. 2020 Nov 28;72(5):1617–1633. doi: 10.1093/jxb/eraa553

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© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Experimental Biology.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 4. — Genome-wide association study for occurrence of pod shattering. Top left: Manhattan plot to show the associations between 52 SNP markers (red dots on the distal region of chromosome Pv05) and the SH y/n trait (dehiscent versus indehiscent lines). Dashed red line, fixed threshold of significance for the 19 420 SNP markers physically distributed across the 11 common bean chromosomes. Top right: QQplot of the distribution of the observed P-values compared with the expected distribution. Bottom: expanded major QTLs on the distal part of chromosome Pv05, defining the significance of the SNP markers from 38.3 Mb to 39.4 Mb on chromosome Pv05.