Skip to main content
. 2021 Feb 16;12:619857. doi: 10.3389/fgene.2021.619857

TABLE 3.

Comparison of classification performances (overall accuracy and F1-score) of subsets of selected genes from different methods, when applying SVM.

Tissue Source of subset genes
Best
t-Test edgeR RF XGBoost RX
Overall accuracy
Adrenal gland 0.937 (0.0719) 0.961 (0.0320) 0.902 (0.0836) 0.931 (0.0783) 0.937 (0.0768) edgeR
Hypothalamus 0.950 (0.0278) 0.939 (0.0454) 0.945 (0.0483) 0.952 (0.0428) 0.954 (0.00641) RX
Liver 0.932 (0.0711) 0.907 (0.0605) 0.933 (0.0387) 0.918 (0.0679) 0.936 (0.0534) RX
Muscle 0.945 (0.0312) 0.937 (0.0446) 0.942 (0.0245) 0.925 (0.0518) 0.960 (0.0414) RX
Pituitary 0.978 (0.00789) 0.973 (0.0204) 0.978 (0.00581) 0.972 (0.00554) 0.979 (0.00701) RX
Overall average 0.9484 0.9434 0.9400 0.9396 0.9532 RX
F1-score
Adrenal gland 0.949 (0.0551) 0.956 (0.0396) 0.915 (0.0714) 0.937 (0.0702) 0.949 (0.0598) edgeR
Hypothalamus 0.948 (0.0289) 0.945 (0.0469) 0.947 (0.0440) 0.948 (0.0482) 0.951 (0.00871) RX
Liver 0.930 (0.0732) 0.886 (0.0845) 0.927 (0.0457) 0.897 (0.0931) 0.932 (0.0575) RX
Muscle 0.948 (0.0367) 0.940 (0.0442) 0.945 (0.0298) 0.924 (0.0577) 0.957 (0.0442) RX
Pituitary 0.988 (0.0195) 0.973 (0.0205) 0.978 (0.0161) 0.958 (0.0197) 0.977 (0.00518) t-Test
Overall average 0.9526 0.9400 0.9424 0.9328 0.9532 RX

Values in brackets are standard deviations.