Skip to main content
. 2021 Feb 16;12:623424. doi: 10.3389/fgene.2021.623424

TABLE 4.

GESA for GO analysis between low- and high-TMB groups.

Group Name ES NES Nom P-value FDR q-value
GO_CC TMB High GO_POSTSYNAPTIC_CYTOSOL 0.587 1.629 0.033 0.245
GO_CC TMB Low GO_LATERAL_PLASMA_MEMBRANE –0.604 –2.093 0 0.069
GO_APICOLATERAL_PLASMA_MEMBRANE –0.728 –2.040 0 0.081
GO_VACUOLAR_PROTON_TRANSPORTING_V_TYPE_ATPASE_COMPLEX –0.701 –1.944 0.006 0.189
GO_MULTIVESICULAR_BODY –0.554 –1.817 0.004 0.231
GO_DENDRITIC_SPINE_MEMBRANE –0.702 –1.706 0.006 0.245
GO_BP TMB High GO_MITOTIC_SISTER_CHROMATID_SEGREGATION 0.654 2.125 0.002 0.062
GO_NEGATIVE_REGULATION_OF_METAPHASE_ANAPHASE_TRANSITION_OF_CELL_CYCLE 0.751 2.166 0 0.066
GO_RESPONSE_TO_UV_C 0.751 2.135 0 0.070
GO_NEGATIVE_REGULATION_OF_CHROMOSOME_SEGREGATION 0.727 2.192 0 0.084
GO_REGULATION_OF_CHROMOSOME_SEGREGATION 0.636 2.045 0.006 0.100
GO_BP TMB Low GO_REGULATION_OF_CYTOPLASMIC_TRANSPORT –0.626 –1.911 0.008 0.240
GO_ENERGY_RESERVE_METABOLIC_PROCESS –0.494 –1.917 0 0.243
GO_NEGATIVE_REGULATION_OF_EMBRYONIC_DEVELOPMENT –0.730 –2.099 0 0.245
GO_RENAL_SODIUM_EXCRETION –0.685 –1.912 0.002 0.245
GO_REGULATION_OF_WNT_SIGNALING_PATHWAY_PLANAR_CELL_POLARITY_PATHWAY –0.731 –1.919 0.008 0.248
GO MF TMB High GO_TRANSMEMBRANE_RECEPTOR_PROTEIN_SERINE_THREONINE_KINASE_BINDING –0.817 –2.199 0 0.020
GO_RECEPTOR_SERINE_THREONINE_KINASE_BINDING –0.689 –2.062 0 0.064
GO_ACTIVIN_BINDING –0.765 –1.950 0 0.104
GO_LYSOPHOSPHOLIPASE_ACTIVITY –0.676 –1.958 0 0.111
GO_VITAMIN_TRANSMEMBRANE_TRANSPORTER_ACTIVITY –0.640 –1.971 0 0.119

ES, enrichment score; NES, normalized enrichment score; NOM P-value, normalized P-value; FDR q-value, false discovery rate q-value.