Table 5.

Prediction accuracy for each trait in Holstein, Jersey and mixed Holstein and Jersey bulls with SNP only and SNP + SV together in 10-fold cross-validation.

Sample Set	Model	Trait
		FY	MY	PY	Fertility	OType
Holstein	SNP	0.645(0.008)	0.751(0.007)	0.808(0.005)	0.525(0.011)	0.588(0.014)
	SNP+SV	0.645(0.008)	0.751(0.007)	0.808(0.005)	0.525(0.011)	0.588(0.014)
Jersey	SNP	0.76(0.013)	0.697(0.018)	0.794(0.011)	0.262(0.026)	0.549(0.023)
	SNP+SV	0.76(0.013)	0.698(0.018)	0.795(0.011)	0.262(0.026)	0.55(0.023)
Holstein+Jersey	SNP	0.657(0.013)	0.835(0.005)	0.788(0.007)	0.623(0.009)	0.553(0.013)
	SNP+SV	0.656(0.013)	0.838(0.005)	0.789(0.007)	0.623(0.009)	0.553(0.013)

Standard errors in parentheses.