Table 4.
Available sequence data for parasites: Table enlists the fish parasites for which genome and transcriptome data are available. a: Transcriptome size, b: Genome size, c: Number of contigs, NA: Not Available.
| Parasite | Molecular Data Type | Sequencing Platform | Size/No. of Contigs | Accession No. | Reference |
|---|---|---|---|---|---|
| Endoparasite | |||||
| Tetracapsuloides bryosalmonae | Transcriptome | NextSeq 550 | 25908 c | [155] | |
| Myxobolus cerebralis | Transcriptome | HiSeq 2000 | 52972 c | GBGI00000000 | [158] |
| Kudoa iwatai | Transcriptome | HiSeq 2000 | 1637 c | GBKL00000000 | [158] |
| Ceratomyxa shasta | Transcriptome | Illumina HiSeq 3000 | NA | SRX3741971 | [168] |
| Sphaerospora molnari | Transcriptome | Illumina HiSeq | 29560 c | PRJNA522909 | [157] |
| Myxobolus squamalis | Transcriptome | Illumina HiSeq 3000 | NA | SRX4615721 | [169] |
| Ectoparasite | |||||
| Gyrodactylus salaris | Whole genome | Roche 454 FLX Titanium Illumina GAII |
120 Mb b | JJOG00000000 | [170] |
| Cryptocaryon irritans | Transcriptome (Trophont) | Illumina HiSeq 2000 | 2.6 Gb a | SRX2417163 | [171] |
| Transcriptome (Theront) |
Illumina HiSeq 2000 | 3.2 Gb a | SRX2417144 | [172] | |
| Argulus siamensis | Transcriptome | Illumina HiSeq 2000 | 46352 c | SRX150806 | [31] |