Table 1.
Primer sets for real-time PCR.
| Primer | Accession No. | Orientation | Sequences | Product (bp) |
|---|---|---|---|---|
| GAPDH | NM_002046 | Sense Antisense |
5’-GGTGGTCTCCTCTGACTTCAACA-3’ 5’-GTTGCTGTAGCCAAATTCGTTGT-3’ |
127 |
| HSV-2 ICP0 | D10471.1 | Sense Antisense |
5’-GTGCATGAAGACCTGGATTCC-3’ 5’-GGTCACGCCCACTATCAGGTA-3’ |
82 |
| HSV-2 ICP27 | D10471.1 | Sense Antisense |
5’-TTCTGCGATCCATATCCGAGC-3’ 5’-AAACGGCATCCCGCCAAA-3’ |
101 |
| HSV-2 ICP8 | D10658.1 | Sense Antisense |
5’-AGGACATAGAGACCATCGCGTTCA-3’ 5’-TGGCCAGTTCGCTCACGTTATT-3’ |
99 |
| HSV-2 gC | AJ297389.1 | Sense Antisense |
5’-AAATCCGATGCCGGTTTCCCAA-3’ 5’-TTACCATCACCTCCTCTAAGCTAGGC-3’ |
120 |
| HSV-2 gD | K02373.1 | Sense Antisense |
5’-ATCCGAACGCAGCCCCGC-3’ 5’-TCTCCGTCCAGTCGTTTAT-3’ |
142 |
| HSV-2 DNA polymerase | M16321.1 | Sense Antisense |
5’-GCTCGAGTGCGAAAAAACGTTC-3’ 5’-CGGGGCGCTCGGCTAAC-3’ |
215 |
| IFN-β | NM_002176.4 | Sense Antisense |
5’-GCCGCATTGACCATCTATGAGA-3’5’-GAGATCTTCAGTTTCGGAGGTAAC-3’ | 346 |
| IFN-λ1 | NM_172140 | Sense Antisense |
5’-CTTCCAAGCCCACCCCAACT-3’ 5’-GGCCTCCAGGACCTTCAGC-3’ |
142 |
| IFN-λ2/3 | NM_172139 | Sense Antisense |
5’-TTTAAGAGGGCCAAAGATGC-3’ 5’-TGGGGCTGAGGCTGGATACAG-3’ |
267 |
| IRF3 | NM_001571.1 | Sense Antisense |
5’-ACCAGCCGTGGACCAAGAG-3’ 5’-TACCAAGGCCCTGAGGCAC-3’ |
65 |
| IRF7 | NM_001572 | Sense Antisense |
5’-TGGTCCTGGTGAAGCTGGAA-3’ 5’-GATGTCGTCATAGAGGCTGTTGG-3’ |
134 |
| STAT1 | NM_007315 | Sense Antisense |
5’-CCGTGGCACTGCATACAATC-3’ 5’-ACCATGCCGAATTCCCAAAG-3’ |
187 |
| STAT2 | XM_017019904.1 | Sense Antisense |
5’-CCCCATCGACCCCTCATC-3’ 5’-GAGTCTCACCAGCAGCCTTGT-3’ |
69 |
| STAT3 | NM_003150 | Sense Antisense |
5’-CTGCCCCATACCTGAAGACC-3’ 5’-TCCTCACATGGGGGAGGTAG-3’ |
162 |
| ISG15 | NM_005101 | Sense Antisense |
5’-GGCTGGGACCTGACGGTGAAG-3’ 5’-GCTCCGCCCGCCAGGCTCTGT-3’ |
492 |
| ISG56 | NM_001270930 | Sense Antisense |
5’-TTCGGAGAAAGGCATTAGA-3’ 5’-TCCAGGGCTTCATTCATAT-3’ |
85 |
| OAS1 | NM_001032409 | Sense Antisense |
5’-AGAAGGCAGCTCACGAAACC-3’ 5’-CCACCACCCAAGTTTCCTGTA-3’ |
71 |
| OAS2 | XM_011538415.1 | Sense Antisense |
5’-CAGTCCTGGTGAGTTTGCAGT-3’ 5’-ACAGCGAGGGTAAATCCTTGA-3’ |
146 |
| MxA | XM_005260982.2 | Sense Antisense |
5’-GCCGGCTGTGGATATGCTA-3’ 5’-TTTATCGAAACATCTGTGAAAGCAA-3’ |
69 |
| MxB | XM_005260983.4 | Sense Antisense |
5’-CAGCAGACGATCAACTTGGTG-3’ 5’-CATGACGCTTTTCTCAGTGCC-3’ |
159 |
| Viperin | NM_001318443.1 | Sense Antisense |
5’-TGGGTGCTTACACCTGCTG-3’ 5’-TGAAGTGATAGTTGACGCTGGT-3’ |
235 |
| GBP5 | NM_001134486.2 | Sense Antisense |
5’-TGGCAAATCCTACCTGATGA-3’ 5’-CCATATCCAAATTCCCTTGG-3’ |
97 |
| RIG-I | NM_014314.4 | Sense Antisense |
5’-CTTGGCATGTTACACAGCTGAC-3’ 5’-GCTTGGGATGTGGTCTACTCA-3’ |
104 |
| IFI16 | NM_001376589.1 | Sense Antisense |
5’-CCGTTCATGACCAGCATAGG-3’ 5’-TCAGTCTTGGTTTCAACGTGGT-3’ |
106 |
| cGAS | NP_612450.2 | Sense Antisense |
5’-GGGAGCCCTGCTGTAACACTTCTTAT-3’ 5’-CCTTTGCATGCTTGGGTACAAGGT-3’ |
186 |
| STING | NP_938023.1 | Sense Antisense |
5’-ACTGTGGGGTGCCTGATAAC-3’ 5’-TGGCAAACAAAGTCTGCAAG-3’ |
197 |
| DAI | NM_001160418.2 | Sense Antisense |
5’-CAACAACGGGAGGAAGACAT-3’ 5’-TCATCTCATTGCTGTGTCCC-3’ |
499 |
| AIM2 | NM_004833.3 | Sense Antisense |
5’-TAGCGCCTCACGTGTGTTAG-3’ 5’-TTGAAGCGTGTTGATCTTCG-3’ |
103 |
| DHX29 | NM_001345965.2 | Sense Antisense |
5’-TCAGCACCTGGGAGCTACTT-3’ 5’-TCTGCATCACTCCACTCCAG-3’ |
111 |