Table 4. Definition of modules in the glycolysis network shown in Figure 5—figure supplement 1.
Model | Internal metabolites | Concentrations of I/O metabolites | Reactions | Output flux |
---|---|---|---|---|
UGPP | 6 pg, dhap, e4p, f6p, fdp, rib5p, ribu5p, sed7p, xyl5p | [g6p]=3.82 mM, [gap]=0.44 mM | ALDO, G6PDH, PFK, PGDH, PGI, Ru5P, R5PI, TA, TIS, TKa, TKb | |
LG | 2 pg, 3 pg, pgp | [gap]=0.44 mM, [pep]=0.08 mM | ENO, GAPDH, PGK, PGM | |
GPP | all in UGPP and in LG, gap | [g6p]=3.82 mM, [pep]=0.08 mM | all in UGPP and in LG | |
FULL | all in GPP, g6p, pep | [Ext glu]=2 µM, [pyr]=10 µM | all in GPP, PTS, PK, PEPCxyl |