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. Author manuscript; available in PMC: 2021 Mar 2.
Published in final edited form as: Genet Epidemiol. 2020 Aug 17;44(8):934–947. doi: 10.1002/gepi.22350

TABLE 6.

SNPs corresponding to 24 verified supervariants

Recessive Chr SNP name Position Minor allele Major allele MAF OR p
Chr1_122 1 rs12026807 121274278 G A 0.48 0.875 8.13 × 10−7
Chr2_218 2 rs6721996 217909463 G A 0.491 1.247 5.67 × 10−18
rs4442975 217920769 G T 0.491 1.253 1.88 × 10−18
Chr3_28 3 rs73055736 27392625 A T 0.416 0.855 4.75 × 10−7
rs73055746 27399466 C T 0.417 0.857 6.57 × 10−7
rs12637322 27389740 C T 0.416 0.854 4.52 × 10−7
rs2370959 27397148 A G 0.414 0.852 3.28 × 10−7
rs55676236 27391598 C A 0.419 0.859 9.24 × 10−7
rs112238765 27388820 A C 0.416 0.855 5.29 × 10−7
rs73055753 27403304 C T 0.416 0.854 4.17 × 10−7
Chr6_152 6 rs6913578 151949806 C A 0.325 1.222 1.14 × 10−8
rs7740686 151948173 T A 0.333 1.216 1.47 × 10−8
rs6557160 151949582 C A 0.333 1.214 1.88 × 10−8
rs58164038 151956201 G A 0.329 1.237 1.46 × 10−9
rs3757322 151942194 G T 0.336 1.205 5.39 × 10−8
Chr9_84 9 rs12551463 83471165 G T 0.162 1.35 2.55 × 10−7
Chr10_124 10 rs2981584 123350216 A C 0.4 1.388 8.65 × 10−30
Chr16_53 16 rs112149573 52581245 T G 0.241 1.453 1.65 × 10−17
rs3095606 52584173 G A 0.262 1.443 2.13 × 10−19
rs1362548 52563951 C G 0.26 1.427 4.71 × 10−18
rs3112578 52585440 C T 0.245 1.433 9.50 × 10−17
rs1345388 52556293 C T 0.259 1.433 2.74 × 10−18
rs3095607 52584295 G T 0.262 1.444 1.80 × 10−19
rs17271951 52538040 C T 0.254 1.45 9.33 × 10−19
rs4784226 52583143 T C 0.242 1.442 6.27 × 10−17
rs4784227 52599188 T C 0.244 1.455 5.63 × 10−18
rs3803661 52586477 A G 0.262 1.44 2.97 × 10−19
rs12930156 52581424 T C 0.262 1.441 3.28 × 10−19
rs3803662 52586341 A G 0.262 1.44 3.27 × 10−19
rs7500427 52545277 A G 0.258 1.443 6.64 × 10−19
rs12600239 52538900 T C 0.257 1.444 9.56 × 10−19
rs35668161 52538825 A C 0.254 1.452 5.97 × 10−19
rs9936081 52549646 A G 0.258 1.437 1.46 × 10−18
rs8045285 52579986 G A 0.246 1.452 5.26 × 10−18
Dominant Chr SNP name Position Minor allele Major allele MAF OR p
Chr2_203 2 rs3769823 202122995 A G 0.28 1.128 9.80 × 10−8
Chr2_214 2 rs7580977 213473493 T G 0.21 1.102 3.12 × 10−5
rs190740846 213176997 C T 0.009 1.201 2.55 × 10−2
rs61521361 213496258 A T 0.344 1.095 9.06 × 10−5
rs2054613 213484354 G C 0.354 1.097 7.25 × 10−5
rs10174150 213487269 C T 0.354 1.095 8.93 × 10−5
rs11679805 213494947 T A 0.344 1.095 8.37 × 10−5
rs5838347 213547305 AT A 0.406 1.132 2.86 × 10−7
rs6736536 213429063 T C 0.341 1.086 3.39 × 10−4
rs13410624 213499043 G A 0.344 1.096 7.43 × 10−5
rs2054615 213484752 T C 0.354 1.097 7.08 × 10−5
rs7601545 213483894 A G 0.354 1.097 7.08 × 10−5
rs66535530 213499028 T C 0.299 1.099 3.44 × 10−5
rs6435714 213442905 T G 0.342 1.085 3.56 × 10−4
rs67447343 213490466 C G 0.347 1.093 1.31 × 10−4
rs6749009 213482684 A G 0.354 1.097 7.26 × 10−5
rs67535717 213492898 A G 0.354 1.095 1.00 × 10−4
rs62186335 213475881 T C 0.21 1.102 3.30 × 10−5
rs6712252 213488021 T C 0.354 1.096 8.24 × 10−5
rs2068404 213484997 C T 0.354 1.097 7.08 × 10−5
rs931216 213493825 T C 0.3 1.098 3.90 × 10−5
rs7606156 213485596 A G 0.356 1.095 8.88 × 10−5
rs13020448 213438055 T C 0.342 1.084 4.33 × 10−4
rs931218 213496624 A C 0.299 1.099 3.70 × 10−5
rs6708862 213487661 T C 0.354 1.096 8.30 × 10−5
rs6435717 213535690 A G 0.384 1.121 1.40 × 10−6
rs10221625 213541714 T C 0.362 1.123 6.87 × 10−7
rs7606703 213473115 C A 0.21 1.102 2.99 × 10−5
rs4673675 213539145 C T 0.363 1.122 8.61 × 10−7
rs72935050 213609001 A T 0.073 1.06 7.35 × 10−2
rs17330768 213494330 G T 0.3 1.099 3.75 × 10−5
rs11676391 213485772 C T 0.354 1.097 7.08 × 10−5
rs6736377 213428760 A G 0.341 1.086 3.45 × 10−4
rs140149813 213243507 G C 0.004 1.259 6.02 × 10−2
rs6749157 213482781 C G 0.354 1.097 7.30 × 10−5
rs6711917 213487687 T C 0.356 1.095 1.00 × 10−4
rs2128324 213490883 A G 0.356 1.094 1.13 × 10−4
rs4673676 213539645 T C 0.363 1.118 1.65 × 10−6
2:213537990_TACCC_T 213537990 T TACCC 0.365 1.119 1.75 × 10−6
rs142052382 213493752 GA G 0.334 1.091 2.16 × 10−4
rs34741122 213498134 G A 0.299 1.099 3.53 × 10−5
rs10177496 213436989 A G 0.221 1.086 3.30 × 10−4
rs57917865 213495985 T G 0.347 1.092 1.39 × 10−4
rs10221626 213541719 A G 0.362 1.123 6.87 × 10−7
rs199875963 213536531 G GT 0.389 1.116 4.06 × 10−6
rs4673669 213477128 A C 0.355 1.094 1.16 × 10−4
rs13394068 213533178 C T 0.358 1.106 1.56 × 10−5
Chr3_28 3 rs12637322 27389740 C T 0.416 0.862 3.11 × 10−10
rs11714071 27377648 G A 0.415 0.863 5.21 × 10−10
Chr5_13 5 rs560776922 12563406 G A 0.006 0.655 7.28 × 10−4
rs560646329 12573113 C T 0.006 0.687 2.13 × 10−3
rs141667948 12970825 C T 0.007 0.637 4.51 × 10−5
Chr5_45 5 rs10941679 44706498 G A 0.255 1.185 9.68 × 10−14
rs10043344 44926518 A T 0.39 1.167 1.91 × 10−10
Chr5_56 5 rs79299334 55991699 A G 0.075 1.21 7.71 × 10−10
rs16886128 55998085 C A 0.103 1.165 3.23 × 10−8
rs74773564 55995869 T C 0.075 1.211 5.79 × 10−10
rs77367410 55992290 G A 0.075 1.212 4.91 × 10−10
rs16886113 55995035 G T 0.079 1.216 1.19 × 10−10
rs74626386 55990052 T G 0.089 1.21 5.83 × 10−11
Chr5_57 5 rs61489170 56021469 GA G 0.165 1.25 1.44 × 10−20
rs7714232 56011357 T A 0.165 1.254 4.45 × 10−21
rs12653202 56016918 C A 0.162 1.254 5.96 × 10−21
rs66893416 56051596 A G 0.164 1.245 8.40 × 10−20
Chr5_174 5 rs187944270 173955315 A G 0.01 1.303 4.21 × 10−4
rs2909714 173814304 T C 0.031 1.145 3.16 × 10−3
5:173903211_AT_A 173903211 A AT 0.005 0.898 3.71 × 10−1
rs555707527 173219789 G A 0.003 1.424 9.70 × 10−3
rs962985 173767987 C A 0.233 1.098 5.70 × 10−5
rs141509709 173926457 T C 0.018 1.158 1.24 × 10−2
rs2913479 173779289 C T 0.23 1.09 1.88 × 10−4
rs2913491 173810101 A T 0.401 1.097 1.51 × 10−4
Chr7_156 7 rs9718441 155094172 T C 0.269 1.096 5.35 × 10−5
rs56181358 155867553 A G 0.09 1.072 1.83 × 10−2
rs73174921 155844449 A G 0.103 1.075 1.00 × 10−2
rs10245853 155097216 G A 0.273 1.099 2.98 × 10−5
7:155202635_CTG_C 155202635 C CTG 0.253 1.022 3.50 × 10−1
rs10264491 155259716 G C 0.346 1.01 6.65 × 10−1
rs141589981 155119687 C T 0.008 1.204 3.16 × 10−2
rs143721983 155248281 T C 0.01 0.819 2.38 × 10−2
rs28637616 155845220 T C 0.102 1.073 1.24 × 10−2
rs6459701 155296003 G A 0.108 1.06 3.89 × 10−2
rs73174937 155863201 G A 0.09 1.081 8.54 × 10−3
rs28705370 155843988 A G 0.104 1.074 1.06 × 10−2
rs6605564 155149763 A G 0.262 1.087 2.50 × 10−4
rs12534832 155242699 C A 0.388 1.051 3.56 × 10−2
rs73174920 155843148 T C 0.103 1.075 1.06 × 10−2
Chr8_129 8 rs12550713 128370949 G C 0.405 1.152 4.37 × 10−9
rs10110330 128370755 A G 0.405 1.153 3.32 × 10−9
rs594868 128344602 A G 0.397 1.147 1.17 × 10−8
Chr9_111 9 rs659713 110893949 T G 0.376 0.875 9.04 × 10−9
rs522463 110886254 G T 0.381 0.878 1.95 × 10−8
rs519679 110885947 C G 0.381 0.878 1.73 × 10−8
9:110893720_GTATT_G 110893720 GTATT G 0.373 0.871 3.28 × 10−9
rs497006 110885781 C T 0.381 0.878 1.67 × 10−8
rs628931 110893030 A G 0.376 0.877 1.33 × 10−8
rs631475 110885650 C A 0.382 0.876 1.09 × 10−8
rs676256 110895353 C T 0.379 0.874 6.27 × 10−9
rs520613 110886052 C T 0.381 0.878 1.89 × 10−8
rs648354 110887106 G A 0.38 0.879 2.46 × 10−8
rs525142 110886534 G A 0.381 0.878 1.72 × 10−8
rs662694 110887996 C G 0.38 0.879 2.30 × 10−8
rs7862747 110892899 C A 0.378 0.875 9.66 × 10−9
rs630965 110885479 C T 0.382 0.876 1.14 × 10−8
rs3119744 110895863 A C 0.377 0.876 9.71 × 10−9
rs527071 110886745 C A 0.38 0.879 2.59 × 10−8
rs857609 110888677 G C 0.38 0.88 2.92 × 10−8
Chr10_65 10 rs34511355 64276964 C A 0.142 0.849 6.42 × 10−10
Chr10_124 10 rs2981584 123350216 A C 0.4 1.391 3.14 × 10−41
rs2981575 123346116 G A 0.4 1.394 7.12 × 10−42
rs1219651 123344501 A G 0.398 1.392 1.50 × 10−41
rs2912774 123348662 T G 0.4 1.395 8.39 × 10−42
rs4752571 123342567 C T 0.398 1.39 4.02 × 10−41
rs2981583 123350523 A G 0.399 1.384 2.71 × 10−39
10:123340431_GC_G 123340431 GC G 0.409 1.398 2.62 × 10−41
Chr11_70 11 rs625668 69308369 A G 0.122 1.227 5.02 × 10−15
rs657686 69332670 G A 0.123 1.294 2.05 × 10−23
rs554219 69331642 G C 0.123 1.292 2.95 × 10−23
Chr12_97 12 rs11836367 96027467 T C 0.35 0.88 3.66 × 10−8
Chr16_53 16 rs4784227 52599188 T C 0.244 1.31 1.57 × 10−32
Chr22_29 22 rs62237617 28761148 T C 0.002 2.90 7.41 × 10−16

Note: Statistics are calculated with corresponding recessive or dominant mode of transmission on the combined dataset.

Abbreviations: MAF, minor allele frequency; OR, odds ratio; SNP, single-nucleotide polymorphism.