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. 2021 Mar 2;11:4957. doi: 10.1038/s41598-021-84518-w

Table 5.

Descriptions of Liriodendron hybrids’ candidate reference genes and associated qPCR analyses.

Symbol Gene description/function GenBank no Primer sequences Tm (°C) Amplicon (bp) Slop R2 E (%)
Rpl2 Ribosomal protein L2/Protein synthesis AF123796 F:5′-ACACCAATCCATCCCGAACT-3′ 79.73 93 − 3.494 0.999 93.3
R:5′-TCCTGGCGTCGAGCTATTT-3′
18S rRNA 18S ribosomal RNA/Constituent of the small ribosomal subunit FR870008 F:5′-ATTTCTGCCCTATCAACTTTCG-3′ 82.42 183 − 3.466 0.998 94.5
R:5′-TTGTTATTTATTGTCACTACCTCC-3′
ACT Actin/Cytoskeletal structural protein GQ246181 F:5′-CTCGGCTGTGGTTGTGAAG-3′ 82.32 160 − 3.469 0.996 94.2
R:5′-TGGTGTGATGGTTGGTATGGG-3′
EF1a Elongation factor 1-alpha /Protein synthesis FR870012 F:5′-ATCATGAATCACCCAGGACA-3′ 80.27 147 − 3.017 0.954 104.5
R:5′-TTCAAGAACTTGGGCTCCTT-3′
EF1g Elongation factor 1-gamma/Protein synthesis FD496784 F:5′-ATCCGGGATTCACTTGGATA-3′ 75.85 114 − 3.349 0.998 98.9
R:5′-CGTCACCCATAACTTTGCAC-3′
GAPDH Glyceraldehyde-3-phosphate dehydrogenase/metabolic function FD495585 F:5′-ACAACTAACTGCCTTGCTCCTT-3′ 83.5 274 − 3.263 0.997 102.5
R:5′-AGTCAGATCCACCACCGAAA-3′
HIS1 Histone H1 linker protein/Compacting DNA strands and Chromatin regulation CO995299 F:5′-AAGCCGAAGAAGGCGAAAGC-3′ 81.93 100 − 3.137 0.986 108.3
R:5′-TCTCGAAGTAGGGCGGATGG-3′
TUA a-Tubulin/Cytoskeletal structural protein FD499140 F:5′-TGACTGGAGCATAAGATGAAAGC-3′ 80.46 153 − 3.300 0.983 100.9
R:5′-CCAATCTCAACCGCCTCG-3′
TUB β-Tubulin/Cytoskeletal structural protein FD493593 F:5′-TCTCCGCCTCCGTAAACTC-3′ 80.64 140 − 3.330 0.991 99.7
R:5′-ATTCATTGGGAACTCAACATCG-3′
UBQ Ubiquitin/Protein degradation CK755254 F:5′-GGCATTCCACCAGACCAGC-3′ 82.49 131 − 3.118 0.998 109.3
R:5′-TGCATCCCGCCCCTCAAT-3′

F forward primer, R reverse primer, Tm melting temperature, Slop standard curve slope, R2 regression coefficient, E amplification efficiency.