Table 2.
Rsid | Chr | BP | Effect/non-effect allele | EAF cases | EAF controls | Cytoband | Odds ratio | 95% CI | P value | P value Eur |
---|---|---|---|---|---|---|---|---|---|---|
rs2120770 | 1 | 212509005 | C/A | 0.179 | 0.218 | q32.3 | 0.717 | 0.63–0.82 | 1.55 × 10−06 | 9.49 × 10−06 |
rs1260326 | 2 | 27730940 | C/T | 0.511 | 0.589 | p23.2 | 0.742 | 0.66–0.83 | 1.32 × 10−07 | 5.67 × 10−07 |
rs1973480 | 6 | 74511980 | G/A | 0.342 | 0.295 | q13 | 1.33 | 1.18–1.5 | 3.35 × 10−06 | 3.68 × 10−06 |
rs2954021 | 8 | 126482077 | G/A | 0.442 | 0.519 | q24.21 | 0.75 | 0.67–0.84 | 2.65 × 10−07 | 2.28 × 10−07 |
rs2984814 | 11 | 31554964 | T/G | 0.259 | 0.325 | p13 | 0.755 | 0.67–0.85 | 2.40 × 10−06 | 1.87 × 10−06 |
rs11077850 | 17 | 74661436 | C/T | 0.255 | 0.18 | q25.1 | 1.38 | 1.21–1.58 | 1.12 × 10−06 | 1.58 × 10−06 |
Novel suggestive-significant MacTel loci. The table presents the most significant SNPs reaching suggestive significance (P < 5 × 10−6) at each locus. All listed genes are covered by the haplotype (as defined by FUMA, based on linkage disequilibrium using the 1000 Genomes Project Europeans). Chr chromosome number, BP base pairs, EAF effect allele frequency, Eur European-only sample subset. This table is duplicated in Supplementary Data 18.