TABLE 2.
Chr | Gene | Top cis-eQTL | bSMR2 | Standard Error | PSMR3 | PHEIDI4 |
4 | PPP3CA | rs2583389 | 0.197 | 0.043 | 4.12E-06 | 7.64E-01 |
10 | CASP7 | rs3814231 | 0.585 | 0.102 | 1.03E-08 | 6.24E-01 |
11 | FADS1 | rs968567 | −0.470 | 0.099 | 2.00E-06 | 3.09E-01 |
11 | FADS2 | rs968567 | −0.63 | 0.138 | 4.35E-06 | 5.87E-01 |
15 | HERC2 | rs2016277 | 0.511 | 0.078 | 6.12E-11 | 2.50E-01 |
16 | SPATA2L1 | rs648548 | −0.824 | 0.169 | 1.07E-06 | 3.95E-02 |
16 | DEF8 | rs8063761 | −1.790 | 0.326 | 3.90E-08 | 1.27E-01 |
19 | IRF3 | rs7251 | −0.366 | 0.070 | 1.42E-07 | 2.56E-02 |
22 | TEF | rs9611565 | −1.099 | 0.208 | 1.30E-07 | 1.23E-01 |
12 | SUOX | rs7302200 | −0.866 | 0.128 | 1.30E-11 | 2.10E-01 |
14 | GZMB | rs2236337 | −0.269 | 0.044 | 1.22E-09 | 1.38E-01 |
16 | CDK101 | rs77651727 | 0.566 | 0.108 | 1.73E-07 | 4.29E-01 |
20 | ASIP | rs62209647 | −0.750 | 0.134 | 2.30E-08 | 4.09E-01 |
12 | RPS26 | rs1131017 | 0.192 | 0.025 | 2.54E-14 | 2.77E-02 |
21 | UBASH3A | rs1893592 | −1.14641 | 0.203846 | 1.87E-08 | 2.42E-01 |
1Two genes were newly identified and marked in bold. 2The estimated effect size of gene expression on vitiligo from the SMR method. 3P-value from the SMR test. 4P-value from the HEIDI test.