Table 1.
Mutant Name | Length of the DNA Sequence Analyzed | Phenotype | Accession Number | Closest Strain | Query Cover (%) | E-Value | Identity (%) | Definition (GenBank) | Definition (GenName) |
---|---|---|---|---|---|---|---|---|---|
Cop1 | 294 | Modified copper tolerance | WP_069672392.1 | Pseudomonas simiae WCS417 | 61 | 1 × 10−31 | 100 | chemotaxis protein CheV | cheV |
Cop33 | 549 | WP_176332083.1 | Pseudomonas simiae WCS417 | 41 | 8 × 10−44 | 100 | Heavy metal response regulator transcription factor | cusR | |
Bfm8 | 468 | Impaired in biofilm formation | PHX42735.1 | Pseudomonas simiae PCL1751 | 100 | 7 × 10−108 | 100 | ATPase AAA | fleQ |
Bfm9 | 212 | WP_045791339.1 | Pseudomonas simiae PCL1751 | 99 | 4 × 10−21 | 100 | membrane protein | - 1 |
Identification of the disrupted genes by Tn5-TcR transposon insertion was carried out using a combination of arbitrary and nested-PCR strategy, followed by sequence comparison using the BLASTn and BLASTx algorithms available at the NCBI website. 1 No definition provided.