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. 2021 Feb 22;13(2):339. doi: 10.3390/v13020339

Table 4.

Short linear motifs (SLiMs) identified among the structural and non-structural proteins encoded in the MERS-CoV genome (KF600612) using the ELM server.

Protein Number of SLiM Number of SLiM Instances SLiM Name SLiM Sequence SLiM Location
ORF1ab 137 2960 DOC_PP2A_B56_1 LNFVGEF 484–490
LTGLGES 562–568
LDTCFEA 655–661
YVIISE 815–820
YTPIDE 2880–2885
IATIKE 5461–5466
LLLVWEA 5473–5479
CCRIVE 6216–6221
LGTIKE 6987–6992
LIG_G3BP_FGDF_1 YDFGDF 4595−4600
LIG_IRF3_LxIS_1 VRAYLGIS 2220–2227
VDLVIS 6899–6904
INELVIS 7042–7048
LIG_NRP_CendR_1 RKLR 7075–7078
KLR 7076–7078
ORF1a 122 1918 DOC_PP2A_B56_1 LNFVGEF 484–490
LTGLGES 562–568
LDTCFEA 655–661
YVIISE 815–820
YTPIDE 2880–2885
LIG_IRF3_LxIS_1 VRAYLGIS 2220–2227
S 84 660 DOC_PP2A_B56_1 FYCILE 183–188
LGNCVEY 600–606
ORF3 23 48 These residues are predicted in well folded region (globular protein domains)
ORF4a 35 58 These residues are predicted in well folded region (globular protein domains)
ORF4b 54 102 These residues are predicted in well folded region (globular protein domains)
ORF5 42 97 These residues are predicted in well folded region (globular protein domains)
E 16 23 DOC_PP2A_B56_1 LPFVQER 2–8
M 43 103 These residues are predicted in well folded region (globular protein domains)
ORF8 20 37 These residues are predicted in well folded region (globular protein domains)
N 51 151 DOC_PP2A_B56_1 WPQIAE 293–298