Table 1.
Instrument |
SEC-SAXS at SWING beamline SOLEIL |
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q range (Å −1) |
0.0022–0.62 |
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Temperature (°C) |
25°C |
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Sample | Rg(Å) Reciprocal Space | I(0) (cm−1/absorbance) Reciprocal Space |
Rg(Å) Real Space | I(0) (cm−1/absorbance) Real Space |
Dmax (Å) |
Porod Volume estimate (Å3) |
MW from Porod Volume/ 1.6 (kDa) |
MW from sequence (kDa) |
HsLa La-module | 26.90 ± 0.40 | 00029 ± 1.1 10−5 | 26.97 ± 0.09 | 0.002876 ± 8.285 10−6 | 84 | 46400 | 29.0 | 22.3 |
HsLa La-module-U4 complex | 23.82 ± 0.25 | 0.0022 ± 1.5 10−5 | 22.76 ± 0.08 | 0.002013 ± 6.678 ± 10 −6 | 69 | 40300 | 25.0 | 22.3 |
HsLaRP7 La-module | 32.08 ± 1.02 | 0.013 ± 2.6 10−5 | 32.20 ± 0.10 | 0.01289 ± 2.965 10−5 | 101 | 58200 | 36.4 | 24.0 |
HsLaRP7 La-module-U4 complex | 26.79 ± 0.30 | 0.024 ±3.5 10−5 | 27.40 ± 0.05 | 0.02369 ± 3.196 10−5 | 92 | 48000 | 30.0 | 24.0 |
HsLaRP6 85–300 La-module | 27.18 ± 0.18 | 0.0045 ± 3 10−5 | 27.20 ± 0.07 | 0.004412 ± 1.539 10−5 | 81 | 51900 | 32.4 | 23.9 |
HsLaRP6 85–300 La-module-48ntSL complex | 31.48 ± 0.13 | 0.0032 ± 1.8 10−6 | 31.60 ± 0.07 | 0.003138 ± 1.220 10−5 | 90 | 94000 | 58.8 | 39.8 |
48ntSL RNA | 22.29 ± 1.77 | 0.0091 ± 9.9 10−6 | 22.47 ± 0.03 | 0.009076 ± 8.442 10−6 | 75 | 20400 | 12.8 | 14.4 |
HsLaRP4A La-module | 22.52 ± 0.60 | 0.0012 ± 2.5 10−5 | 21.66 ± 0.16 | 0.001151 ± 8.423 10−6 | 68 | 27800 | 17.4 | 20.5 |
HsLaRP4B La-module | 21.33 ± 0.29 | 0.0018 ± 2.8 10−5 | 21.37 ± 0.03 | 0.01821 ± 1.937 10−5 | 67 | 28900 | 18.1 | 21.6 |
Software employed | ||||||||
Primary reduction | Foxtrot | |||||||
Data processing | ATSAS 2.8 and Scatter | |||||||
Ab initio analysis | DAMMIF/DAMMIN | |||||||
Validation and averaging | DAMAVER | |||||||
Computation of model intensities | CRYSOL | |||||||
3D graphic representation | PyMOL |