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. 2020 Mar 18;18(2):194–206. doi: 10.1080/15476286.2020.1733799

Table 1.

SAXS-derived parameters and experimental details

Instrument
SEC-SAXS at SWING beamline SOLEIL
q range (Å −1)
0.0022–0.62
Temperature (°C)
25°C
Sample Rg(Å) Reciprocal Space I(0)
(cm−1/absorbance) Reciprocal Space
Rg(Å) Real Space I(0)
(cm−1/absorbance) Real Space
Dmax
(Å)
Porod Volume estimate
3)
MW from Porod Volume/
1.6 (kDa)
MW from sequence (kDa)
HsLa La-module 26.90 ± 0.40 00029 ± 1.1 10−5 26.97 ± 0.09 0.002876 ± 8.285 10−6 84 46400 29.0 22.3
HsLa La-module-U4 complex 23.82 ± 0.25 0.0022 ± 1.5 10−5 22.76 ± 0.08 0.002013 ± 6.678 ± 10 −6 69 40300 25.0 22.3
HsLaRP7 La-module 32.08 ± 1.02 0.013 ± 2.6 10−5 32.20 ± 0.10 0.01289 ± 2.965 10−5 101 58200 36.4 24.0
HsLaRP7 La-module-U4 complex 26.79 ± 0.30 0.024 ±3.5 10−5 27.40 ± 0.05 0.02369 ± 3.196 10−5 92 48000 30.0 24.0
HsLaRP6 85–300 La-module 27.18 ± 0.18 0.0045 ± 3 10−5 27.20 ± 0.07 0.004412 ± 1.539 10−5 81 51900 32.4 23.9
HsLaRP6 85–300 La-module-48ntSL complex 31.48 ± 0.13 0.0032 ± 1.8 10−6 31.60 ± 0.07 0.003138 ± 1.220 10−5 90 94000 58.8 39.8
48ntSL RNA 22.29 ± 1.77 0.0091 ± 9.9 10−6 22.47 ± 0.03 0.009076 ± 8.442 10−6 75 20400 12.8 14.4
HsLaRP4A La-module 22.52 ± 0.60 0.0012 ± 2.5 10−5 21.66 ± 0.16 0.001151 ± 8.423 10−6 68 27800 17.4 20.5
HsLaRP4B La-module 21.33 ± 0.29 0.0018 ± 2.8 10−5 21.37 ± 0.03 0.01821 ± 1.937 10−5 67 28900 18.1 21.6
Software employed
Primary reduction Foxtrot
Data processing ATSAS 2.8 and Scatter
Ab initio analysis DAMMIF/DAMMIN
Validation and averaging DAMAVER
Computation of model intensities CRYSOL
3D graphic representation PyMOL