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. 2021 Jan 25;5(3):360–368. doi: 10.1038/s41559-020-01378-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a, Violin plot of genetic diversity estimated using π in non-overlapping 10-kb windows. b, Manhattan plot of genetic diversity (π) estimated in 250-kb windows for the natural (green), cultivated (blue), New Zealand (red) and French (yellow) populations. Local polynomial regression fittings are shown on the plots. c, LD decay in the four different types of population, with the thin line indicating the distance at which LD is one-half of its maximum. d, ROH in the 41 individuals. Natural, cultivated, New Zealand and French are shown in green, blue, red and yellow, respectively.