Table 2.

DEGs related to quorum sensing, chemotaxis, and biofilm formation in P. polymyxa SC2

	Gene	Product	name	log2FC(SH/S)
Quorum sensing	PPSC2_02180	peptide ABC transporter substrate-binding protein	oppF1	2.61
	PPSC2_02185	peptide ABC transporter permease	oppB1	4.2
	PPSC2_02190	peptide ABC transporter permease	oppC1	3.94
	PPSC2_02195	ABC transporter substrate-binding protein	oppA1	4.92
	PPSC2_05715	peptide ABC transporter substrate-binding protein		2.65
	PPSC2_05720	transports peptides consisting of two or three amino acids	dppB	2.71
	PPSC2_05725	peptide ABC transporter permease	oppC3	2.31
	PPSC2_10965	ABC transporter substrate-binding protein	oppA5	2.11
	PPSC2_10970	diguanylate cyclase	oppB5	2.2
	PPSC2_10975	peptide ABC transporter permease	oppC5	2.85
	PPSC2_10980	peptide ABC transporter ATPase	oppD3	2.88
	PPSC2_10985	peptide ABC transporter substrate-binding protein	oppF3	2.58
	PPSC2_13025	nickel transporter permease NikC	dppC3	2.23
	PPSC2_24700	ABC transporter ATPase	oppD7	2.07
	PPSC2_25400	peptide ABC transporter substrate-binding protein	oppF9	2.94
	PPSC2_25405	peptide ABC transporter ATPase	oppD9	3.6
	PPSC2_25410	peptide ABC transporter permease	oppC9	3.35
	PPSC2_25415	diguanylate cyclase	oppB9	3.26
	PPSC2_25420	ABC transporter substrate-binding protein	dbp	2.91
Chemotaxis	PPSC2_08335	chemotaxis protein AER	aer	3.25
	PPSC2_18805	chemotaxis protein		−4.65
	PPSC2_09975	histidine kinase CheA	cheA	2.11
	PPSC2_09985	cheC	cheC	1.71
	PPSC2_09990	chemotaxis protein CheD	cheD	1.49
	PPSC2_14595	chemotaxis protein CheR	cheR3	2.73
	PPSC2_21235	chemotaxis protein CheR	cheR5	−2.53
	PPSC2_09980	coupling protein CheW	cheW	2.04
	PPSC2_09970	effector protein CheY	cheY	2.26
	PPSC2_09915	flagellar motor switch protein FliM	fliM	2.16
	PPSC2_09920	flagellar motor switch protein FliN	fliN	2.16
Biofilm formation	PPSC2_00125	AbrB family transcriptional regulator	abrB	−3.06
	PPSC2_23095	Transcriptional regulatory protein DegU	degU	2.02
	PPSC2_05800	tyrosine protein kinase	epsB	6.69
	PPSC2_05810	multidrug MFS transporter	epsE	6.25
	PPSC2_25275	transcriptional regulator	sinR	−1.2
	PPSC2_03845	histidine kinase	kinA	2.34
	PPSC2_03710	Regulator Abh	abh	2.74