Table 1. Summary of electron microscopy data and structure refinement statistics for wild-type ABCA4.
Data collection | |
---|---|
Microscope | Titan Krios (FEI) |
Voltage (kV) | 300 |
Detector | K2 Summit (Gatan) |
Pixel size (Å) | 1.03 |
Defocus range (μm) | 0.8–2.5 |
Movies | 5226 |
Frames/movie | 50 |
DDose rate (electrons/pixel/s) | 8 |
Total dose (electrons/Å2) | 75 |
Number of particles | 1,375,284 |
Model composition | |
Non-hydrogen atoms | 15,789 |
Protein residues | 1941 |
Lipids Digitonin |
14 1 |
Sugar molecules | 14 |
Refinement | |
Resolution (Å) | 3.3 |
Sharpening B-factor (Å2) | −99.8 |
Root-mean-square deviations | |
Bond lengths (Å) | 0.006 |
Bond angles (°) | 1.185 |
Validation | |
Molprobity score | 2.16 |
Clashscore, all atoms | 18.86 |
Favored rotamers (%) | 97.10 |
Ramachandran plot (%) | |
Favored | 94.28 |
Allowed | 5.72 |
Outliers | 0.0 |