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. 2021 Mar 4;11:5239. doi: 10.1038/s41598-021-84569-z

Table 2.

List of simulated systems.

System Glycoform HA FF Length (ns) DOI data
G1a Myeloma asialo None GLYCAM06 3×5×1000 10.5281/zenodo.3742147
G2a Myeloma monosialo None GLYCAM06 3×5×1000 10.5281/zenodo.3742149
G3a,b Partial monosialo None GLYCAM06 3×5×1000 10.5281/zenodo.3742154
G4 Full pentasaccharide None GLYCAM06 3×5×1000 10.5281/zenodo.3742158
B1e Non-glycosylated HA18 GLYCAM06 8×1000 10.5281/zenodo.4005682
B2f Full GlcNAc HA18 GLYCAM06 8×1000 10.5281/zenodo.4005689
B3c,d,g Full asialo HA18 GLYCAM06 8×1000 10.5281/zenodo.4005691
B4d,f Full monosialo HA18 GLYCAM06 8×1000 10.5281/zenodo.4005695
B5b Partial monosialo HA18 GLYCAM06 8×1000 10.5281/zenodo.4005701
B6f Full polysialo HA18 GLYCAM06 8×1000 10.5281/zenodo.4005707
B7 Full extended asialo HA18 GLYCAM06 8×1000 10.5281/zenodo.4005740
B8 Full pentasaccharide HA18 GLYCAM06 8×1000 10.5281/zenodo.4005743
C1a,c,d Myeloma asialo HA18 CHARMM36 3×1000 10.5281/zenodo.3742175
C2a,c,d Myeloma monosialo HA18 CHARMM36 3×1000 10.5281/zenodo.3742177
G5 Non-glycosylated HA6 GLYCAM06 20×1000 10.5281/zenodo.3742160
G6 Non-glycosylated HA6 GLYCAM06 10×1000 10.5281/zenodo.3742167

Glycoform tells the N-glycan content on the CD44 HABD in each system. HA tells whether HA was present and which kind. FF lists the simulation force field. Length lists the duration of the simulations. Glycoforms of CD44 were experimentally found in: aRef.26, bRef.19, cRef.9, dRef.18, eRef.24, fRef.16, and gRef.17.