Table 2.
System | Glycoform | HA | FF | Length (ns) | DOI data |
---|---|---|---|---|---|
G1 | Myeloma asialo | None | GLYCAM06 | 10.5281/zenodo.3742147 | |
G2 | Myeloma monosialo | None | GLYCAM06 | 10.5281/zenodo.3742149 | |
G3 | Partial monosialo | None | GLYCAM06 | 10.5281/zenodo.3742154 | |
G4 | Full pentasaccharide | None | GLYCAM06 | 10.5281/zenodo.3742158 | |
B1 | Non-glycosylated | GLYCAM06 | 10.5281/zenodo.4005682 | ||
B2 | Full GlcNAc | GLYCAM06 | 10.5281/zenodo.4005689 | ||
B3 | Full asialo | GLYCAM06 | 10.5281/zenodo.4005691 | ||
B4 | Full monosialo | GLYCAM06 | 10.5281/zenodo.4005695 | ||
B5 | Partial monosialo | GLYCAM06 | 10.5281/zenodo.4005701 | ||
B6 | Full polysialo | GLYCAM06 | 10.5281/zenodo.4005707 | ||
B7 | Full extended asialo | GLYCAM06 | 10.5281/zenodo.4005740 | ||
B8 | Full pentasaccharide | GLYCAM06 | 10.5281/zenodo.4005743 | ||
C1 | Myeloma asialo | CHARMM36 | 10.5281/zenodo.3742175 | ||
C2 | Myeloma monosialo | CHARMM36 | 10.5281/zenodo.3742177 | ||
G5 | Non-glycosylated | GLYCAM06 | 10.5281/zenodo.3742160 | ||
G6 | Non-glycosylated | GLYCAM06 | 10.5281/zenodo.3742167 |
Glycoform tells the N-glycan content on the CD44 HABD in each system. HA tells whether HA was present and which kind. FF lists the simulation force field. Length lists the duration of the simulations. Glycoforms of CD44 were experimentally found in: Ref.26, Ref.19, Ref.9, Ref.18, Ref.24, Ref.16, and Ref.17.