REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
Escherichia coli Rosetta (DE3) pLysS | Novagen | Cat# 70956 |
Chemicals, peptides, and recombinant proteins | ||
LB medium | Nacalai Tesque | Cat# 20068-75 |
TB medium | Becton Dickinson | Cat# 243820 |
Kanamycin | Fujifilm-Wako | Cat# 117-00341 CAS# 133-92-6 |
Chloramphenicol | Fujifilm-Wako | Cat# 032-19451 CAS# 56-75-7 |
Isopropyl β-d-galactopyranoside | Fujifilm-Wako | Cat# 099-05013 CAS: 367-93-1 |
Tris | Nacalai Tesque | Cat# 35434-21 CAS# 77-86-1 |
NaCl | Nacalai Tesque | Cat# 31320-34 CAS# 7647-14-5 |
Tris 2-carboxyethylphosphine (TCEP)-HCl | Nacalai Tesque | Cat# 07277-16 CAS# 51805-45-9 |
Glycerol | Nacalai Tesque | Cat# 17018-83 CAS# 56-81-5 |
cOmplete EDTA-free protease inhibitor | Sigma-Aldrich | Cat# 05056489001 |
Polyethyleneimine (MW 70,000) | Fujifilm-Wako | Cat# 167-11951 CAS# 9002-98-6 |
Ammonium sulfate | Nacalai Tesque | Cat# 02619-15 CAS# 7783-20-2 |
Imidazole | Fujifilm-Wako | Cat# 095-00015 CAS# 288-32-4 |
Thrombin | Nacalai Tesque | Cat# 33842-44 CAS# 9002-04-4 |
Guanidine hydrochloride | Fujifilm-Wako | Cat# 077-02435 CAS# 50-01-1 |
Ethanol | Fujifilm-Wako | Cat# 057-04456 CAS# 64-17-5 |
Bis-Tris | Hampton Research | Cat# HR2-783 CAS# 6976-37-0 |
HEPES | Hampton Research | Cat# HR2-729 CAS# 7365-45-9 |
Polyethylene glycol (PEG) 3350 | Hampton Research | Cat# HR2-144 CAS# 25322-68-3 |
SRC1 peptide (LTERHKILHRLLQEG) | GenScript | N/A |
DMSO | Nacalai Tesque | Cat# 13445-45 CAS# 67-68-5 |
GW7647 | Cayman Chemical | Cat# 10008613 CAS# 265129-71-3 |
Bezafibrate | Cayman Chemical | Cat# 10009145 CAS# 41859-67-0 |
Tetradecylthioacetic acid (TTA) | Fujifilm-Wako | Cat# 209-18141 CAS# 2921-20-2 |
Wy14643 | Cayman Chemical | Cat# 70730 CAS# 50892-23-4 |
GW9662 | Cayman Chemical | Cat#70785 CAS# 22978-25-2 |
Ciprofibrate | Fujifilm-Wako | Cat# 033-21191 CAS# 52214-84-3 |
Fenofibric acid | Combi-Blocks | Cat# OR-1173 CAS# 42017-89-0 |
5,8,11,14-Eicosatetraynoic acid (ETYA) | Cayman Chemical | Cat# 90120 CAS# 1191-85-1 |
Eicosapentaenoic acid (EPA) | Cayman Chemical | Cat# 90110 CAS# 10417-94-4 |
Clofibric acid | LKT Labs | Cat# C4556 CAS# 882-09-7 |
Gemfibrozil | Combi-Blocks | Cat# OR-0524 CAS# 25812-30-0 |
Arachidonic acid | Cayman Chemical | Cat#10006607 CAS# 6610-25-9 |
Pemafibrate | ChemScene | Cat# CS-6084 CAS# 848259-27-8 |
Saroglitazar | ChemScene | Cat# CS-6149 CAS# 495399-09-2 |
Palmitic acid | Sigma-Aldrich | Cat# P0500-10G CAS# 57-10-3 |
Stearic acid | Sigma-Aldrich | Cat# S4751-1G CAS# 57-11-4 |
Oleic acid | Nacalai Tesque | Cat# 25630-51 CAS# 112-80-1 |
Deposited data | ||
34 novel human PPARα-LBD co-crystal structures reported in Kamata et al. (2020) | Protein Data Bank (PDB) | Codes: 6KAX, 6KAY, 6KAZ, 6KB0, 6KB1, 6KB2, 6KB3, 6KB4, 6KB5, 6KB6, 6KB7, 6KB8, 6KB9, 6KBA, 6KYP, 6L36, 6L37, 6L38, 6LX4, 6LX5, 6LX6, 6LX7, 6LX8, 6LX9, 6LXA, 6LXB, 6LXC, 7BPY, 7BPZ, 7BQ0, 7BQ1, 7BQ2, 7BQ3, 7BQ4 |
Recombinant DNA | ||
pET28a encoding human PPARα residues 200–468 | (Oyama et al., 2009) | N/A |
Other | ||
Bioshaker BR-43FL | TAITEC | Cat# 0053027-000 |
Ultrasonic disrupter UD-201 with Micro Tip TP-040 | Tomy | Cat# UD-201 |
AKTAprime plus | Cytiva (GE Healthcare) | N/A |
HisTALON superflow cartridges (1 mL) | Clontech | Cat# 635650 |
HiTrap Q HP (1 mL) | Cytiva (GE Healthcare) | Cat# 17115301 |
HiLoad 16/600 Superdex 75 pg | Cytiva (GE Healthcare) | Cat# 28989333 |
Slide-A-Lyzer G2 dialysis cassette | Thermo Fisher | Cat# 87735 |
AMICON ULTRA-4, 4-mL; 3 kDa cutoff | Merck Millipore | Cat# UFC800324 |
AMICON ULTRA-15, 15-mL; 3 kDa cutoff | Merck Millipore | Cat# UFC900324 |
EasyXtal 15-Well Tool X-Seal (20) | QIAGEN | Cat# 132008 |
Dual-thickness MicroMounts (75 μm) | MiTeGen | Cat# M2-L18SP-75 |
18 mm mounted CryoLoop - 20 μm | Hampton Research | Cat# HR4-972 |
Bio-Rad protein assay | Bio-Rad | Cat# 5000006JA |
Human hair (on the crown of the head) | Young adult males | N/A |