Table 6. Stage-by-stage 3D reconstruction results for 15 protein targets in EVfold dataset using true Cβ-Cβ contact maps at 8Å threshold and true secondary structuresa.
| Target | Stage 1 | Stage 1 + Stage 2 | Stage 1 + Stage 2 + Stage 3 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| TM-score | QH | QE | TM-score | QH | QE | TM-score | QH | QE | |
| 1bkrA | 0.75 | 37.14 | - | 0.87 | 74.29 | - | 0.90 | 98.57 | - |
| 1e6kA | 0.61 | 37.25 | 0.00 | 0.79 | 70.59 | 20.00 | 0.87 | 92.16 | 85.00 |
| 1f21A | 0.65 | 29.31 | 4.17 | 0.82 | 63.79 | 27.08 | 0.88 | 98.28 | 60.42 |
| 1g2eA | 0.43 | 14.29 | 0.00 | 0.67 | 80.95 | 0.00 | 0.77 | 100.00 | 36.00 |
| 1hzxA | 0.75 | 1.1 | 0.00 | 0.87 | 60.22 | 0.00 | 0.91 | 86.19 | 25.00 |
| 1oddA | 0.60 | 9.38 | 0.00 | 0.67 | 59.38 | 0.00 | 0.77 | 100.00 | 42.86 |
| 1r9hA | 0.44 | 0.00 | 0.00 | 0.74 | 42.86 | 0.00 | 0.82 | 100.00 | 77.78 |
| 1rqmA | 0.59 | 10.26 | 0.00 | 0.80 | 51.28 | 24.00 | 0.84 | 89.74 | 68.00 |
| 1wvnA | 0.45 | 19.36 | 0.00 | 0.71 | 74.19 | 17.65 | 0.78 | 100.00 | 70.59 |
| 2hdaA | 0.24 | - | 5.26 | 0.53 | - | 0.00 | 0.61 | - | 47.37 |
| 2it6A | 0.52 | 11.11 | 0.00 | 0.79 | 66.67 | 8.82 | 0.86 | 100.00 | 58.82 |
| 2o72A | 0.38 | - | 2.13 | 0.71 | - | 27.66 | 0.81 | - | 87.23 |
| 3tgiE | 0.64 | 0.00 | 2.63 | 0.88 | 0.00 | 13.16 | 0.94 | 57.14 | 71.05 |
| 5p21A | 0.61 | 0.00 | 0.00 | 0.88 | 75.81 | 5.13 | 0.93 | 98.39 | 74.36 |
| 5ptiA | 0.44 | 0.00 | 0.00 | 0.64 | 50.00 | 40.00 | 0.79 | 100.00 | 60.00 |
| Mean | 0.54 | 13.02 | 1.01 | 0.76 | 59.23 | 13.11 | 0.83 | 93.88 | 61.75 |
a For target 1bkrA, QE scores are ignored since there is no beta strand residue in the experimental structure; and for targets 2hdaA and 2o72A, QH scores are ignored since there are no helix residues in their experimental structures.