Table 1. Baseline characteristics of recruited datasets for adult and paediatric patient.
GSE54514 | GSE57065 | GSE95233 | GSE64456 | GSE66099 | GSE72829 | |
---|---|---|---|---|---|---|
Patient type | Adult | Adult | Adult | Pediatric | Pediatric | Pediatric |
Age, mean (yr) a,b | ≥18, 60.3 | ≥18, 62 | ≥18, 65 | ≤2 mo, 29 d | ≤10, 3.7 | ≤17, 1.9 mo |
Sex (male %)b | 40 | 67.9 | 65 | 52 | 58 | 62 |
Nonsurvivor (%) | 25.7 | 17.9 (28 d) | NA | NA | 16.3 | 19.2 |
Cohort description | ICU with sepsis or | ICU with | ICU with | ED with sepsis | PICU with sepsis or | Discovery group |
septic shock | septic shock | septic shock | (PECARN study) | septic shock | (IRIS study) | |
Severity evaluation | APACHEII | SOFA | SOFA | YOSb | PRISM | NA |
Control (n) | 18 | 25 | 22 | 19 | 49 | 52 |
Sepsis or septic shock (n) | 35 | 28 | 51 | 89 | 198 | 94 |
Randomized selection without replacement (septic shock) | 18 | 25 | 22 | - | - | - |
Randomized selection without replacement (sepsis) | - | - | - | 18 | 49 | 52 |
Measured frequency, frequency (time points) | 5 (1, 2, 3, 4, 5 d) | 3 (0, 24, 28 hr) | 3 (1–2, 3–4, 7–10 d) | 1 | 1 | 1 |
Recruited time pointsc | 0–24 hr | 0–24 hr | 1–2 d | NA | 0–24 hr | 5 d |
Platform | Illumina, GPL6947 | Affymetrix, GPL570 | Affymetrix, GPL570 | Illumina, GPL10558 | Affymetrix, GPL570 | Illumina, GPL10558 |
Reference | [11] | [12] | [16] | [13] | [14] | [15] |
ED, emergency department; ICU, intensive care unit; NA, data not available; hr, hour; d, day; APACHEII, acute physiology and chronic health evaluation II; SOFA, sequential (sepsis related) organ failure assessment.
b Percent of male and age are summarized data derived from the previous studies, which could be different from the analysis performed in this study. The sepsis patient was randomly selected corresponding to the number of the control cases.
cYOS, Yale observation score (6–30).