Table 2. Differentially expressed gene analysis between control and sepsis followed by gene set pathway analysisa.
GSE54514 | GSE57065 | GSE95233 | GSE64456 | GSE66099 | GSE72829 | |
---|---|---|---|---|---|---|
Patient type | Adult | Adult | Adult | Pediatric | Pediatric | Pediatric |
Control cases (n) | 18 | 25 | 22 | 19 | 49 | 52 |
Sequential selection of sepsis cases (n) | 18 | 25 | 22 | 19 | 49 | 52 |
Differentially expressed Genes (n) | 176 | 7885 | 6784 | 3123 | 8229 | 7463 |
Up regulated pathway (n) | 0 | 60 | 44 | 13 | 78 | 51 |
Down regulated pathway (n) | 0 | 33 | 33 | 16 | 33 | 15 |
Up regulated immune pathway | C, Fc, RIG | C, Fc | C, Fc, NK, K, TLR | APC, C, CXC & etc, Fc, IgA, | BCR, C, Fc, CXC & etc, LK, NK, TLR | |
Down regulated immune pathway | APC, TCR, H, K | APC, BCR, CXC & etc, IgA, TCR | APC, IgA, TCR | H, TCR | APC, IgA, TCR |
aDifferentially expressed gene was selected based on FDR (P<0.01).
APC, Antigen processing and presentation; BCR, B cell receptor signaling; C, Complement and coagulation; CXC & etc, chemokine signaling; Fc, Fc gamma R mediated phagocytosis or Fc epsilon RI signaling; H, hematopoietic cell lineage; IgA, intestinal immune network for IgA production; LM, leukocyte endothelial migration; NK, NK cell mediated cytotoxicity; RIG, RIG-I like receptor signaling; TLR, Toll like receptor signaling; TCR, T cell receptor signaling.