Table 3. Network topological parameters from gene expression data from GEO dataset for adult and paediatric patient.
GSE54514 | GSE57065 | GSE95233 | GSE95233-1 | GSE64456 | GSE66099 | GSE72829 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Patient type | Adult | Adult | Adult | Adult | Pediatric | Pediatric | Pediatric | |||||||
Disease type | Control | septic shock | control | septic shock | control | septic shock | survivor | non survivor | Control | sepsis | Control | sepsis | Control | sepsis |
Clustering coefficient | 0.319 | 0.323 | 0.328 | 0.280 | 0.328 | 0.367 | 0.390 | 0.337 | 0.367 | 0.390 | 0.337 | 0.388 | 0.381 | 0.435 |
Network density | 0.013 | 0.016 | 0.012 | 0.010 | 0.012 | 0.039 | 0.026 | 0.014 | 0.039 | 0.026 | 0.014 | 0.012 | 0.030 | 0.034 |
Network heterogeneity | 1.039 | 1.142 | 1.151 | 1.172 | 1.151 | 1.504 | 1.358 | 1.193 | 1.504 | 1.358 | 1.193 | 1.091 | 1.249 | 1.129 |
Connected components | 27 | 30 | 42 | 61 | 42 | 34 | 33 | 47 | 34 | 33 | 47 | 32 | 16 | 25 |
Network diameter | 19 | 17 | 14 | 15 | 14 | 12 | 19 | 11 | 12 | 19 | 11 | 14 | 13 | 9 |
Network centralization | 0.059 | 0.079 | 0.103 | 0.048 | 0.103 | 0.196 | 0.113 | 0.075 | 0.196 | 0.113 | 0.075 | 0.078 | 0.148 | 0.121 |
Shortest path | 160514 | 80598 | 59638 | 17222 | 59638 | 142640 | 121152 | 11730 | 142640 | 121152 | 11730 | 36902 | 38092 | 22532 |
Characteristic path length | 7.418 | 5.267 | 5.276 | 5.088 | 5.276 | 3.862 | 7.211 | 3.482 | 3.862 | 7.211 | 3.482 | 4.705 | 3.92 | 2.824 |
Average degree, <k> | 5.93 | 7.42 | 5.30 | 3.64 | 5.30 | 17.87 | 11.71 | 4.04 | 17.87 | 11.71 | 4.04 | 4.50 | 8.43 | 10.27 |
Number of nodes, N | 464 | 453 | 426 | 367 | 426 | 457 | 448 | 297 | 457 | 448 | 297 | 380 | 284 | 299 |
Degree correlation, μ | 0.489 | 0.508 | 0.422 | 0.810 | 0.422 | 0.403 | 0.715 | 0.546 | 0.403 | 0.715 | 0.546 | 0.210 | 0.475 | 0.346 |
Modularity, Mc | 0.743 | 0.662 | 0.644 | 0.806 | 0.644 | 0.198 | 0.581 | 0.694 | 0.198 | 0.581 | 0.694 | 0.745 | 0.434 | 0.603 |
GSE95233-1 indicates survivors (n = 16) and non-survivors (n = 16) among sepsis patients.