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. 2021 Mar 5;16(3):e0247669. doi: 10.1371/journal.pone.0247669

Table 3. Network topological parameters from gene expression data from GEO dataset for adult and paediatric patient.

GSE54514 GSE57065 GSE95233 GSE95233-1 GSE64456 GSE66099 GSE72829
Patient type Adult Adult Adult Adult Pediatric Pediatric Pediatric
Disease type Control septic shock control septic shock control septic shock survivor non survivor Control sepsis Control sepsis Control sepsis
Clustering coefficient 0.319 0.323 0.328 0.280 0.328 0.367 0.390 0.337 0.367 0.390 0.337 0.388 0.381 0.435
Network density 0.013 0.016 0.012 0.010 0.012 0.039 0.026 0.014 0.039 0.026 0.014 0.012 0.030 0.034
Network heterogeneity 1.039 1.142 1.151 1.172 1.151 1.504 1.358 1.193 1.504 1.358 1.193 1.091 1.249 1.129
Connected components 27 30 42 61 42 34 33 47 34 33 47 32 16 25
Network diameter 19 17 14 15 14 12 19 11 12 19 11 14 13 9
Network centralization 0.059 0.079 0.103 0.048 0.103 0.196 0.113 0.075 0.196 0.113 0.075 0.078 0.148 0.121
Shortest path 160514 80598 59638 17222 59638 142640 121152 11730 142640 121152 11730 36902 38092 22532
Characteristic path length 7.418 5.267 5.276 5.088 5.276 3.862 7.211 3.482 3.862 7.211 3.482 4.705 3.92 2.824
Average degree, <k> 5.93 7.42 5.30 3.64 5.30 17.87 11.71 4.04 17.87 11.71 4.04 4.50 8.43 10.27
Number of nodes, N 464 453 426 367 426 457 448 297 457 448 297 380 284 299
Degree correlation, μ 0.489 0.508 0.422 0.810 0.422 0.403 0.715 0.546 0.403 0.715 0.546 0.210 0.475 0.346
Modularity, Mc 0.743 0.662 0.644 0.806 0.644 0.198 0.581 0.694 0.198 0.581 0.694 0.745 0.434 0.603

GSE95233-1 indicates survivors (n = 16) and non-survivors (n = 16) among sepsis patients.