Figure 1. A short Rlim mRNA variant highly expressed in testis is generated via alternative polyadenylation in mature male mice.

(A) A Northern blot containing RNA extracts from various adult mouse tissues (WT for Rlim) was hybridized with an Rlim probe (upper panel) and a probe recognizing β-actin as loading control (lower panel). (B) Modified from the UCSC Genome Browser: Cumulative raw reads from RNA-seq datasets of testes RNA isolated from post-natal mice at 6, 12, 16, 20, and 38 days post-partum (dpp) (Margolin et al., 2014) were mapped on the Rlim locus (variable scales). Structure of the Rlim gene is shown below in blue with boxed exon regions. Protein coding regions are indicated in thicker stroke. Blue arrow indicates direction of transcription. ATG start codon, TGA stop codon and site of alternative polyadenylation sequence (red dotted line) is indicated. Note low relative read density 3’ of the alternative polyadenylation site specifically in 38 dpp animals. (C) Nucleotide sequence containing an alternative polyadenylation site downstream of the TGA stop codon. Conserved motifs including a T-rich sequence, A/TATAAA, and CA motifs are boxed. The cleavage position is indicated (green arrow).