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. 2021 Jan 18;10:e58410. doi: 10.7554/eLife.58410

Table 1. Model parameters.

Original parameters
Parameter Description (dimension) Literature estimates References
r Net replication rate of bacteria (hour−1) 1.0 Berngruber et al., 2013
K Carrying capacity of bacteria (cells mL−1) 109 Berngruber et al., 2013
a Adsorption rate of phages to bacteria (hour−1 (cells per mL)−1) 10-910-7 De Paepe and Taddei, 2006; Shao and Wang, 2008
b Proportion of adsorptions of a phage to a susceptible cell that leads to infection (cells phage−1) set at 10-2, not measured Berngruber et al., 2013
B Burst size (phages) 10—3.5· 103 De Paepe and Taddei, 2006; Wang, 2006
α Rate of spontaneous lysogen induction (hour−1) 10-4—10-3 Little et al., 1999; Zong et al., 2010; Berngruber et al., 2013
δ Spontaneous decay rate of free phages (hour−1) 10-3—2·10-2 De Paepe and Taddei, 2006
u Uptake rate of arbitrium by cells (arbitrium mL−1 (cells per mL)−1) no estimates known -
Scaled dimensionless parameters used in parameter sweeps
Parameter Description Default value Parameter sweep range
B^=bB Effective burst size 2 1—103
a^=aKr Scaled adsorption rate of phages to cells 10 1—100
δ^=δr Scaled decay rate of phage particles 0.01 10-3—0.1
α^=αr Scaled spontaneous phage induction rate 10-3 10-4—10-2
u^=uKr Scaled rate of arbitrium uptake and degradation by cells 0.1 10-3—1
D Dilution factor of phages at serial passages 0.01 10-3—0.1