TABLE 3.
Size of subnetwork (vertex number) of genes up-regulated in tumors for a probability density of p = 0.975.
| Cancer | GDC RPKMupper |
TCGA RSEM-UQ |
GDC RPKMupper + LogNorm |
GDC FPKM-UQ |
||||
| Type | Av. | StDv. | Av. | StDv | Av. | StDv. | Av. | StDv. |
| PRAD | 269.19 | 62.01 | 254.20 | 40.66 | 5046.23 | 1209.45 | 4029.75 | 499.89 |
| LUAD | 290.35 | 58.66 | 276.35 | 49.07 | 4973.16 | 1203.25 | 4779.27 | 401.19 |
| LUSC | 345.21 | 48.50 | 317.12 | 48.33 | 5824.63 | 904.38 | 4981.60 | 460.49 |
| BRCA | 311.55 | 46.50 | 286.50 | 42.16 | 5305.85 | 1219.24 | 4816.61 | 361.22 |
| KIRC | 332.28 | 42.37 | 328.10 | 52.85 | 5117.83 | 881.77 | 4556.75 | 294.80 |
| KIRP | 313.48 | 49.64 | 303.22 | 41.14 | 4983.68 | 1136.93 | 4678.77 | 305.26 |
| THCA | 256.52 | 47.31 | 276.95 | 57.44 | 4016.13 | 948.02 | 4142.73 | 387.09 |
| STAD | 341.67 | 52.90 | 276.59 | 51.66 | 6773.41 | 928.62 | 4764.48 | 351.76 |
| LIHC | 352.74 | 68.99 | 256.24 | 85.31 | 7007.28 | 143.05 | 4522.08 | 400.83 |
| Average | 312.55 | 52.99 | 286.14 | 52.07 | 5449.80 | 1096.08 | 4585.78 | 384.72 |
| St. Dev. | 34.34 | 8.57 | 25.49 | 13.72 | 942.86 | 189.53 | 315.90 | 66.69 |