Antibodies |
Rabbit polyclonal anti-RADX |
Novus Biologicals |
Cat#NBP2-13887; RRID: AB_2687552 |
Mouse monoclonal anti-RAD51 (14B4) |
Abcam |
Cat# ab213, RRID:AB_302856 |
Mouse monoclonal anti FLAG M2 |
Sigma Aldrich |
Cat#F3165; RRID:AB_259529 |
Rabbit polyclonal anti-GFP |
Santa Cruz |
Cat#sc-8334; RRID:AB_641123 |
Rabbit polyclonal to GST |
Abcam |
Cat# ab111947 AB_10861266 |
Mouse monoclonal anti-phospho-Histone H2A.X (Ser139) |
Millipore |
Cat#16-193, RRID:AB_310795 |
Mouse monoclonal anti BrdU |
BD |
Cat#347580; RRID:AB_10015219 |
Rat monoclonal anti BrdU |
Abcam |
Cat#ab6326; RRID:AB_305426 |
Goat anti-Mouse IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor Plus 488 |
Life Technologies |
Cat# A32723; RRID:AB_2633275 |
Goat anti-Rat IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 |
Life Technologies |
Cat# A11007; RRID:AB_10561522 |
Chemicals, Peptides, and Recombinant Proteins |
CldU |
Sigma Aldrich |
Cat#C6891 |
IdU |
Sigma Aldrich |
Cat#l7125 |
EdU |
VICB synthesis core |
N/A |
Alexa Fluor 647 azide |
Thermo Fisher |
Cat#A10277 |
Hydroxyurea |
Sigma Aldrich |
Cat#H8627 |
MBP-RADX |
This study |
N/A |
MBP-RADX OB2m |
This study |
N/A |
MBP-RADX QVPK |
This study |
N/A |
GFP-RADX |
This study |
N/A |
RAD51 |
Provided by M.M. |
N/A |
RAD51 K133R |
Provided by M.M. |
N/A |
RAD51 K133A |
Provided by M.M. |
N/A |
RPA |
Provided by W.J.C. |
N/A |
GST-BRC3/4 |
Provided by Patrick Sung |
N/A |
RPA-mCherry |
Provided by E.J.C. |
N/A |
Critical Commercial Assays |
Duolink In Situ PLA Probe Anti-Rabbit PLUS |
Sigma Aldrich |
Cat#DU092002
|
Duolink In Situ PLA Probe Anti-Rabbit MINUS |
Sigma Aldrich |
Cat#DU092004
|
Duolink In Situ Detection Reagents, Red |
Sigma Aldrich |
Cat#DU092008
|
Coverslips |
MicroSurfaces Inc. |
N/A |
|
|
|
Experimental Models: Cell Lines |
U2OS |
ATCC |
Cat#HTB-96; RRID:CVCL_0042 |
HEK293T |
ATCC |
Cat#CRL-11268; RRID:CVCL_1926 |
U2OS ΔRADX |
(Dungrawala et al., 2017) |
N/A |
Oligonucleotides |
dT60: 5’-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-3’ |
IDT |
N/A |
dT72: 5’-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-3′ |
IDT |
N/A |
OligoD1: 5’-AAATCAATCTAAAGTATATATGAGTAAACTTGGTCTGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTT-3’ |
IDT |
N/A |
Recombinant DNA |
Plasmid pDC1272 = pLEFP-FLAG-RADX |
This study |
N/A |
Plasmid pMA32 = pLEGFP FLAG-RADX QVPK |
This study |
N/A |
Plasmid pMA33 = pLEGFP-FLAG-RADX IV |
This study |
N/A |
Plasmid pMA34 = pLEGFP-FLAG-RADX LLY |
This study |
N/A |
Plasmid pMA35 = pLEGFP-FLAG-RADX R389E |
This study |
N/A |
Plasmid pMA36 = pLEGFP-FLAG-RADX LF |
This study |
N/A |
Plasmid pMA37 = pLEGFP-FLAG-RADX ELDD |
This study |
N/A |
Plasmid pKB06 = pEF1a-RADX |
This study |
N/A |
Plasmid pKB29= pEF1a-RADX OB2m |
This study |
N/A |
Plasmid pMA39= pEF1a-RADX-QVPK |
This study |
N/A |
Software and Algorithms |
GraphPad Prism8/9 |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/; RRID: SCR_000306 |
ImageLab |
BioRad |
http://www.biorad.com/en-us/sku/1709690-image-lab-software; RRID:SCR_014210 |
MODELLER v9.16 |
(Eswar et al., 2006) |
https://salilab.org/modeller; RRID:SCR_008395 |
PyMOL Version 2.0 |
The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC. |
https://www.pymol.org/; RRID:SCR_000305 |
Scipion |
(de la Rosa-Trevin et al., 2016) |
http://scipion.i2pc.es; RRID:SCR_016738 |
Deposited Data |
|
|
Unprocessed blots, gels and microscopy images |
This paper |
https://dx.doi.org/10.17632/g3rfkjw225.1 |