Table 4.
Indel statistics between P3B and P3A.
| Indel type | Sample Indel start | Sample Indel end | Ref start | Ref end | Indel sequence |
|---|---|---|---|---|---|
| Deletion | 2,120 | 2,120 | 2,043 | 2,044 | A |
| Insertion | 4,578 | 4,579 | 4,502 | 4,502 | A |
| Insertion | 5,968 | 5,969 | 5,874 | 5,874 | A |
| Insertion | 6,867 | 6,874 | 6,773 | 6,773 | TTAGAAT |
| Insertion | 9,216 | 9,217 | 9,120 | 9,120 | T |
| Insertion | 9,918 | 9,920 | 9,823 | 9,823 | TT |
| Insertion | 10,023 | 10,024 | 9,926 | 9,926 | T |
| Insertion | 14,026 | 14,029 | 13,948 | 13,948 | TTT |
| Deletion | 4,049 | 4,049 | 3,973 | 3,974 | A |
| Deletion | 6,193 | 6,193 | 6,099 | 6,100 | T |
| Deletion | 6,906 | 6,906 | 6,806 | 6,807 | A |
| Deletion | 8,244 | 8,244 | 8,145 | 8,148 | AAA |
| Deletion | 8,950 | 8,950 | 8,854 | 8,855 | A |
| Deletion | 9,312 | 9,312 | 9,216 | 9,218 | AA |
| Deletion | 13,076 | 13,076 | 12,998 | 12,999 | T |
| Deletion | 14,155 | 14,155 | 14,075 | 14,077 | TT |
| Insertion | 34,910 | 34,911 | 34,849 | 34,849 | T |
| Deletion | 31,641 | 31,641 | 31,563 | 31,564 | T |
| Deletion | 32,028 | 32,028 | 31,951 | 31,952 | A |
| Deletion | 32,440 | 32,440 | 32,364 | 32,365 | T |
| Deletion | 32,676 | 32,676 | 32,601 | 32,602 | A |
| Deletion | 33,433 | 33,433 | 33,359 | 33,360 | T |
| Insertion | 38,917 | 38,918 | 38,855 | 38,855 | A |
| Insertion | 39,292 | 39,296 | 39,230 | 39,230 | AAAT |
| Deletion | 39,030 | 39,030 | 38,968 | 38,969 | A |
| Insertion | 45,711 | 45,721 | 45,645 | 45,645 | AATAGAATTT |
| Insertion | 49,606 | 49,613 | 49,459 | 49,459 | ATAATAT |
| Deletion | 49,919 | 49,919 | 49,766 | 49,769 | AAA |
| Insertion | 50,243 | 50,253 | 50,093 | 50,093 | TATTTATTAT |
| Insertion | 50,764 | 50,770 | 50,604 | 50,604 | AAATAA |
| Deletion | 51,179 | 51,179 | 51,014 | 51,015 | A |
| Deletion | 52,028 | 52,028 | 51,864 | 51,865 | T |
| Deletion | 56,219 | 56,219 | 56,059 | 56,069 | TATATATATT |
| Insertion | 59,188 | 59,190 | 59,037 | 59,037 | TT |
| Insertion | 59,540 | 59,541 | 59,387 | 59,387 | T |
| Insertion | 64,912 | 64,913 | 64,770 | 64,770 | T |
| Deletion | 65,990 | 65,990 | 65,848 | 65,850 | TT |
| Deletion | 66,393 | 66,393 | 66,253 | 66,255 | AA |
| Deletion | 67,327 | 67,327 | 67,189 | 67,190 | T |
| Insertion | 69,095 | 69,104 | 68,957 | 68,957 | TAAATAGAG |
| Deletion | 69,769 | 69,769 | 69,623 | 69,624 | T |
| Insertion | 72,736 | 72,737 | 72,590 | 72,590 | T |
| Insertion | 74,912 | 74,921 | 74,783 | 74,783 | TTTTCTAGG |
| Insertion | 76,289 | 76,291 | 76,151 | 76,151 | TT |
| Insertion | 82,883 | 82,884 | 82,741 | 82,741 | T |
| Deletion | 82,520 | 82,520 | 82,378 | 82,379 | A |
| Insertion | 86,764 | 86,765 | 86,642 | 86,642 | T |
| Deletion | 86,257 | 86,257 | 86,135 | 86,136 | T |
| Insertion | 130,605 | 130,606 | 130,498 | 130,498 | A |
| Deletion | 130,814 | 130,814 | 130,707 | 130,710 | TTA |
| Deletion | 131,816 | 131,816 | 131,712 | 131,713 | A |
| Deletion | 148,302 | 148,302 | 148,084 | 148,085 | A |
| Deletion | 148,313 | 148,313 | 105,742 | 105,743 | T |