Table 1.
Primers for quantitative PCR assay
| Primer ID | Primer sequences (5′-3′) | Product length (bp) |
|---|---|---|
| R-chr11:34495233|34500943-CF1 | TTACTACTGGCTGCCGAGGT | 154 |
| R-chr11:34495233|34500943-CR1 | TATCCATCTGGAGCCTGTCC | |
| R-chr11:34495233|34500943-LF1 | CGTCTGCAGAGAACATTCCA | 248 |
| R-chr11:34495233|34500943-LR1 | AGCACTGTCTTCCAGCAGGT | |
| R-chr17:43258446|43290432-CF1 | GGTGAAACGGGCCATACTTA | 169 |
| R-chr17:43258446|43290432-CR1 | CACTTTGGTCAGGGAGGTGT | |
| R-chr17:43258446|43290432-LF1 | TTTTGGGATGCTTCCTTTTC | 167 |
| R-chr17:43258446|43290432-LFR1 | GGAGGTCTTCAGCCTGACAT | |
| R-chr2:139502624|139520450-CF1 | GCTGGCTGGTTTTACCTCAA | 168 |
| R-chr2:139502624|139520450-CR1 | GATGCCCACAGCTGTTACAA | |
| R-chr2:139502624|139520450-LF1 | TTGGGGCTTGGTGTAATCTC | 152 |
| R-chr2:139502624|139520450-LR1 | GGCCAATGTCTACCAGCAGT | |
| R-chr3:160491308|160495240-CF1 | TGAGGAAGAGGAAGGAACCA | 153 |
| R-chr3:160491308|160495240-CR1 | CCATTTCTATGGCCGTGATT | |
| R-chr3:160491308|160495240-LF1 | AATGGACTCTGGCACGATGG | 172 |
| R-chr3:160491308|160495240-LR1 | CCTTCCTCTTCCTCATCCTCC | |
| R-chr11:47165426|47169764-CF1 | GACAGATGAAGTGCGGAGGT | 217 |
| R-chr11:47165426|47169764-CR1 | GGTGAAGGTCATTCCGAGAG | |
| R-chr11:47165426|47169764-LF1 | TAACTTGGGCCTTGAGGATG | 182 |
| R-chr11:47165426|47169764-LR1 | TGATCGATGACTTGGGACAA | |
| R-chr12:8189807|8220963-CF1 | CGACTGAGGGACAGATGTGA | 249 |
| R-chr12:8189807|8220963-CR1 | GTAAACTCCTGCGTGGTGGT | |
| R-chr12:8189807|8220963-LF1 | TGGATACGGTTCTCGGTTTT | 154 |
| R-chr12:8189807|8220963-LR1 | GCGTACGATCACAGACATGG | |
| R-chr8:23048110|23048640-CF1 | CGTCATGTTCTGGGGTAGGT | 187 |
| R-chr8:23048110|23048640-CR1 | CAACACTCTCAATGGCCTCA | |
| R-chr8:23048110|23048640-LF1 | CCACCAAGGTCACACTTCCT | 157 |
| R-chr8:23048110|23048640-LR1 | ACCTACCCCAGAACATGACG | |
| R-chr9:1442054|1485363-CF1 | CTTTGCTCGACCACAGGATT | 162 |
| R-chr9:1442054|1485363-CR1 | AGGTCGTCCCACTCTCTCAA | |
| R-chr9:1442054|1485363-LF1 | CCATTCCCTTTGCTCGAC | 151 |
| R-chr9:1442054|1485363-LR1 | AACCCATATATTTGTGGTGGAA | |
| R-Nptxr-F | GGCCAATGAGATCGTGTTGC | 124 |
| R-Nptxr-R | CCAGGCGATGCAGATATGGT | |
| R-Wnt7b-F | CGCGAGAAGCAAGGCTACTA | 194 |
| R-Wnt7b-R | TCCAGTTTCATGCGGTCCTC | |
| R-Ifit3-F | TCGTCTGAGTGCCCACTTTC | 106 |
| R-Ifit3-R | TTGACCTCACTCATGACGGC | |
| R-Rsad2-F | TTCACGCGTCAGTGCAACTA | 188 |
| R-Rsad2-R | CTCACGAGCTTGCCCAAGTA | |
| R-Cxcl10-F | TGCAAGTCTATCCTGTCCGC | 192 |
| R-Cxcl10-R | CTCTCTGCTGTCCATCGGTC | |
| R-Isg15-F | GAAGGCCCATGGAGGACAAA | 128 |
| R-Isg15-R | CATTGGCTCTGGATAGGGGC | |
| R-Irg1-F | GGAACATTGCAAATGTGTGGGT | 151 |
| R-Irg1-R | GTGAACGCTTGCAAGGCAATA | |
| R-Pax8-F2 | CCCACTGCCCTTACTCAACA | 143 |
| R-Pax8-R2 | CCTGCTTTATGGCGTAGGGT | |
| R-Rtp3-F2 | TGCACCAACTTTGATTTCTGAAG | 143 |
| R-Rtp3-R2 | TGTGAAGGTCCATTTGTGCC | |
| R-Oasl-F2 | GCAAGGCTACAGGTGGGATA | 157 |
| R-Oasl-R2 | TAAATCCGGGTGACCCCACT |