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. 2020 Nov 2;29(3):512–523. doi: 10.1038/s41431-020-00747-z

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — Phylogeny [25] including 27 different MSY sequences, with branch lengths proportional to the number of single-nucleotide mutations. Terminal branches are coloured by population, as shown in the key, and sample names are given at the tips of branches. SNPs chosen for typing in this study are indicated on relevant branches in plain text. Other mutations (e.g., L664) are in italics, and were not typed in all samples. To the right is indicated the approximate equivalence to lineages previously identified [23, 34], and verified in this study. Nomenclature of R1a and R1a1 here is according to ref. [50]. Unobserved lineages, including the deep-rooting paragroup R1a1-GML1*, are indicated by dotted lines.