Table 2. MetaQC quantitative quality control measures for selected datasets.
| Dataset | IQC | EQC | CQCg | CQCp | AQCg | AQCp | Rank |
|---|---|---|---|---|---|---|---|
| GSE43353 | 4.91 | 4 | 59.48 | 23.64 | 41.5 | 25.54 | 2.00 |
| GSE75678 | 0.61* | 3.82 | 97.4 | 62.92 | 68.53 | 36.21 | 2.08 |
| GSE27447 | 3.14 | 4 | 17.81 | 3.39 | 11.45 | 8.21 | 3.42 |
| GSE36295 | 4.91 | 3.82 | 14.14 | 17.3 | 5.53 | 10.24 | 3.67 |
| GSE61724 | 5.31 | 3.7 | 15.31 | 7.95 | 8.53 | 5.38 | 3.83 |
*, low performance. IQC, internal quality control; EQC, external quality control; CQCg, consistency quality control of differential expression ranking in genes; CQCp, consistency quality control of differential expression ranking in pathways; AQCg, accuracy quality control of differentially expressed gene detection; AQCp, accuracy quality control of pathway identification.