Table 2.
Gene | Nucleotide length | Genotype of RV59* | Strains with the most closely related segments† | Nucleotide identity (%) |
---|---|---|---|---|
VP4 | 1,716 | P[2] | P[2]-RVA/Human-tc/KEN/B10/1987/G3P2 | 84.5 |
VP6 | 1,031 | I16 | I16-RVA/Human-tc/KEN/B10/1987/G3P2 | 92.6 |
VP1 | 2,982 | R8 | R8-BatRVA322/Taphozous mauritianus/KEN/Kwale/2015 | 91.0 |
R8-RVA/Human-tc/KEN/B10/1987/G3P2 | 88.9 | |||
VP2 | 2,670 | C3 | C3-Equine RV A strain RVA/Horse-wt/ARG/E3198/2008/G3P[3] | 96.9 |
VP3 | 2,209 | M5 | M5-RVA/Simian-lab/USA/SA11-tsC-606/1982/G3P[2] | 91.7 |
M5-RVA/Human-tc/KEN/B10/1987/G3P2 | 89.2 | |||
NSP1 | 1,455 | A35 | A12-RVA/Human-tc/THA/T152/1998/G12P9 | 56.6 |
NSP2 | 471 | N3 | N3-Equine RV A strain RVA/Horse-wt/ARG/E3198/2008/G3P[3] | 95.9 |
NSP3 | 865 | T3 | T3-Equine RV A strain RVA/Horse-wt/ARG/E3198/2008/G3P[3] | 96.0 |
RV = rotavirus.
Based on the RV Classification Working Group recommendation.
Based on the NCBI BlastN search or sequence alignment comparison.