Table 1.
A full list of TFs that are shown in Figure 2a. These TFs have been functionally characterized or analyzed in published literatures (see References). The entire dataset of 831 PDIs is provided in Table S2.
| Gene ID | Gene Name | Biological process | Target gene | Reference |
|---|---|---|---|---|
| Zm00001d046828 | ZmPP2C-21 | ABA signaling | ZmPRX1 | (Wang et al., 2014) |
| Zm00001d032024 | ZmMYB38 | Lignin biosynthesis | ZmPRX1 | (Barrière et al., 2015) |
| Zm00001d043569 | ZmWAKY69 | Defense signaling | ZmPRX1 | (Agostini et al., 2019) |
| Zm00001d005951 | Zmhdz10 | Drought response | ZmPRX1 | (Zhao et al., 2014) |
| Zm00001d049543 | ZmCCA1b | Circadian clock | ZmBiP2 | (Hayes et al., 2010, Ko et al., 2016) |
| Zm00001d007042 | ZmbZIP17a | ER stress | ZmBiP2 | (Srivastava et al., 2018) |
| Zm00001d016861 | ZmAL8 | Chromatin remodeling | ZmBiP2 | (Wang et al., 2015a) |
| Zm00001d032923 | ZmHSF24 | Drought stress | ZmBiP2 | (Du et al., 2017b) |
| Zm00001d039506 | ZmNAC84 | ABA response | ZmBiP2 | (Zhu et al., 2016b) |
| Zm00001d040004 | ZmLBD20 | Development | ZmBiP2 | (Zhang et al., 2014c) |
| Zm00001d050816 | ZmAL6 | Chromatin remodeling | ZmBiP2 | (Wang et al., 2015a) |
| Zm00001d027510 | ZmNLP1 | Nitrogen response | ZmBiP2 | (Ge et al., 2018) |
| Zm00001d042492 | ZmBBM1 | Development | ZmBiP2 | (Salvo et al., 2014) |
| Zm00001d049913 | ZmNTL2 | Drought stress | ZmBiP2 | (Xue et al., 2013) |
| Zm00001d028999 | ZmNAC44 | Drought stress | ZmBiP2 | (Ding et al., 2014) |
| Zm00001d018178 | ZmbZIP4 | ABA response | ZmSAR1 | (Ma et al., 2018) |
| Zm00001d049141 | ZmIAA34 | Auxin signaling | ZmSAR1 | (Ludwig et al., 2013) |
| Zm00001d006739 | ZmLBD14 | Development | ZmSAR1 | (Zhang et al., 2014c) |
| Zm00001d018973 | ZmIAA25 | Auxin signaling | ZmSAR1 | (Pautler et al., 2015) |
| Zm00001d043782 | ZmRAV1 | Osmotic stress | ZmSAR1 | (Min et al., 2014) |
| Zm00001d030727 | ZmOBP2 | C4 photosynthesis | ZmSAR1 | (Skirycz et al., 2006) |
| Zm00001d035512 | ZmEREB81 | Hypoxia stress | ZmSAR1 | (Du et al., 2014) |
| Zm00001d017147 | ZmDBB6 | Development | ZmBi1 | (Li et al., 2017) |
| Zm00001d040611 | ZmLG3 | Development | ZmBi1 | (Mantilla-Perez and Salas Fernandez, 2017) |
| Zm00001d022099 | ZmNF-YB16 | Drought stress | ZmBi1 | (Wang et al., 2018a) |
| Zm00001d027874 | ZmNF-YA1 | Drought stress | ZmBi1 | (Luan et al., 2015) |
| Zm00001d036648 | ZmNF-YC8 | Drought stress | ZmBi1 | (Song et al., 2017) |
| Zm00001d034601 | ZmSNAC1 | ABA response | ZmBi1 | (Yue et al., 2015) |
| Zm00001d048369 | ZmCCT | Flowering | ZmBi1 | (Jin et al., 2018) |
| Zm00001d052890 | ZmUB3 | Development | ZmBi1 | (Chuck et al., 2014) |
| Zm00001d009939 | ZmWAKY34 | Defense signaling | ZmbZIP60 | (Kebede et al., 2018) |
| Zm00001d026628 | ZmDOF1.6 | Flowering | ZmbZIP60 | (Song et al., 2017) |
| Zm00001d012962 | ZmPP2C-4 | ABA signaling | ZmbZIP60 | (Wang et al., 2014) |
| Zm00001d002429 | ZmGRF8 | Starch synthesis | ZmCP1 | (Zhang et al., 2019) |
| Zm00001d032032 | ZmMYB167 | Cell wall lignin | ZmCP1 | (Bhatia et al., 2019) |
| Zm00001d006835 | ZmNF-YA3 | Drought stress | ZmCP1 | (Su et al., 2018) |
| Zm00001d027957 | ZmMADS47 | Kernel storage | ZmBiP2/ZmSAR1 | (Qiao et al., 2016) |
| Zm00001d042609 | ZmNAC109 | Drought stress | ZmSAR1ZmBi1 | (Wang et al., 2019) |
| Zm00001d046718 | ZmbZIP60 | ER stress | ZmSAR1/ZmBi1 | (Srivastava et al., 2018) |
| Zm00001d053859 | ZmEREB98 | Osmotic stress | ZmbZIP60/ZmCP1 | (Yu et al., 2018) |
| Zm00001d032295 | ZmDREBl | Cold stress | ZmBi1/ZmbZIP60 | (Zheng et al., 2006, Avila et al., 2018) |
| Zm00001d038189 | ZmbZIP17b | ER stress |
ZmBi1/ZmBiP2/ZmS AR1/ZmbZIP60 |
(Srivastava et al., 2018) |
| Zm00001d039065 | ZmGBF1 | Hypoxia stress |
ZmBi1/ZmBiP2/ZmS AR1/ZmbZIP60/Zm CP1/ZmPRX1 |
(De Vetten and Ferl, 1995) |
| Zm00001d041472 | ZmNAC7 | Growth and fitness |
ZmBi1/ZmBiP2/ZmS AR1/ZmbZIP60/Zm CP1/ZmPRX1 |
(Zhang et al., 2019) |
| Zm00001d002025 | ZmEREB24 | Hypoxia stress |
ZmBi1/ZmBiP2/ZmS AR1/ZmbZIP60/Zm CP1/ZmPRX1 |
(Du et al., 2017a) |