TABLE 1.

Summary of RNA-Seq alignment.

Sample	Raw reads	Clean reads	Clean data	Mapped reads	Unique mapped reads	Multi mapped reads	Pair-end mapped reads
D9-1	80264870	79920206	79920206	68178049	59622092	8555957	55462262
D9-2	99983254	99744758	99744758	85959081	75870870	10088211	71456836
D9-3	112640612	112359702	112359702	96921221	85014782	11906439	79691222
D12-1	79756340	79500512	79500512	68207012	60816876	7390136	56550554
D12-2	90024798	89795156	89795156	76819268	68087133	8732135	64065452
D12-3	82742908	82518014	82518014	70522524	62567425	7955099	58785092
D15-1	101114958	100851876	100851876	86841361	76739965	10101396	72360248
D15-2	99697522	99456902	99456902	85586127	75673496	9912631	71276362
D15-3	101700048	101442704	101442704	87219987	77018064	10201923	72659846