FIGURE 6.

Use of the Plot Gene Network Tab. This figure shows the view we get when we use the Plot Gene Network tab to visualize the gene ATP1A3. We chose this gene because it is associated with PD and is one of the genes with high module membership within the yellow module of the SNIG GCN within the 10UKBEC category (Figure 5). After clicking the “Accept” button, the plot shows, highlighted in red, the gene ATP1A3 as a very important gene within its module (as indicated by the large node size). There are 16 other genes, which appear as its nearest neighbour and they can be used to further study the transcriptomic context of ATP1A3. Note that this example has been visually recreated in a demonstration video available at the Help section of the CoExp web under the “Plot Gene Network” section.