TABLE 1.
Percent identity of nucleotide and amino acid sequences between PAstV5-AH29-2014 and PAstV5 reference strains
| Reference strain | Country | GenBank accession no. | Identity (%) |
Subgenotype | Reference | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Complete genome | 5′UTR | ORF1a |
ORF1b |
ORF2 |
3′UTR | ||||||||
| nt | aa | nt | aa | nt | aa | ||||||||
| PAstV5/JPN/Ishi-Im1-2/2015 | Japan | LC201620 | 84.8 | 79.1 | 88.8 | 96.8 | 90.9 | 98.8 | 75.9 | 78.6 | 100 | PAstV5a | 32 |
| PAstV5/JPN/MoI2-1-3/2015 | Japan | LC201617 | 85.2 | 76.1 | 89.2 | 97.2 | 92.1 | 99.0 | 76.3 | 79.3 | 86.0 | 32 | |
| PAstV5/JPN/HgTa2-2/2015 | Japan | LC201616 | 84.8 | 75.6 | 89.0 | 97.4 | 90.4 | 98.8 | 76.7 | 79.7 | 78.9 | 32 | |
| PAstV5/JPN/MoI2-3-1/2015 | Japan | LC201618 | 85.1 | 76.1 | 89.2 | 97.2 | 92.1 | 98.6 | 76.3 | 79.3 | 79.2 | 32 | |
| PAstV5-33/USA | USA | JF713711 | 84.5 | 78.5 | 87.1 | 97.8 | 91.3 | 98.6 | 78.6 | 80.1 | 81.2 | 21 | |
| PAstV5-US-IA122 | USA | JX556693 | 84.3 | 85.2 | 87.0 | 98.1 | 90.8 | 98.1 | 76.9 | 79.0 | 80.5 | 31 | |
| PAstV5-LL-2 | China | KP747574 | 72.8 | 41.2 | 72.0 | 80.1 | 76.9 | 89.7 | 71.3 | 74.4 | 83.2 | 56 | |
| PAstV5/JPN/Ishi-Im1-1/2015 | Japan | LC201619 | 88.9 | 78.4 | 90.4 | 97.0 | 91.5 | 98.6 | 84.8 | 92.9 | 97.7 | PAstV5b | 32 |
| CC12 | Canada | JN088537 | NAa | NA | NA | NA | NA | NA | 74.0 | 78.6 | 76.9 | PAstV5c | 24 |
a
NA, not available.