TABLE 3.

The QTL-alleles changes from WA to LR and RC.

	WA		LR vs. WA		RC vs. LR		LR + RC vs. WA
	Locus	Allele	Locus	Allele	Locus	Allele	Locus	Allele
NDVI
Total	38	85	38	84	38	86	38	88
Inherited			38	82	38	82	38	84
Emerged			2	2	2	2	4	4
Recovery			–	–	2	2	–	–
Excluded			3	3	2	2	1	1
Changed			4	5	5	6	5	5
CHL
Total	32	76	32	80	32	81	32	82
Inherited			32	76	32	80	32	76
Emerged			4	4	2	2	5	6
Recovery			–	–	–	–	–	–
Excluded			–	–	1	1	–	–
Changed			4	4	3	3	5	6

WA, wild accession; LR, cultivated farmer landraces; RC, released modern cultivars. LR vs. WA means the number of changed alleles or changed loci of LR compared with WA. Inherited: the inherited allele/locus between populations. Emerged: the emerged allele/locus between populations. Excluded: the excluded allele/locus between populations. Changed: the changed allele/locus between populations (the emerged plus excluded alleles). Recovery: the alleles that were excluded from WA to LR but were recovered in RC. In LR vs. WA of NDVI, 1 of the 2 emerged alleles was in the newly formed QTL qNdvi-01-5 in LR, which was not polymorphic in WA, while in RC vs. LR of NDVI, 1 of the 2 emerged alleles was in the newly formed. QTL qNdvi-03-1 in RC, which was not polymorphic in WA and LR.