Table 1.
Overview of 102 essential gene silencing experiments
Target gene | Cultures# | Stable kd * | Stable miniCR | Maximum kd (%)§ | Revertants& | Strong miniCR$ |
---|---|---|---|---|---|---|
slaB+ | 52 | 30 | SB-2, SB-3, SB-3x2, SB-3x6 | 75 | 22 | SB-123, SB-23, SB-3x6 (colony) |
aif5A+ | 11 | 6 | aIF5A-II | 40 | 5 | aIF5A-I |
cdvABC | 23 | 10 | CA-2 | 50 | 13 | CA-1, CA-3, CA-123 |
smAP2 | 16 | 13 | SM2 | 60 | 3 | SM2 (colony) |
#Cultures: Number of independently transformed cultures carrying a miniCRISPR vector; *Stable Kd: Number of cultures with measurable and stable knockdown of the essential gene; §Maxmimum kd: maximum knockdown observed in stably silenced cultures expressed as % mRNA lost compared to Ctrl; &Revertants: Number of cultures reverted to wild type owing to strong miniCRs; $Strong miniCR: miniCR conveying strong silencing leading to their instability; + Data pooled from published studies (ref. [31,32]) and from freshly transformed cultures. Colony = constructs changed after recovery from a single colony