Table 3A:
Proteins expressed at relatively higher level in LRB by LFQ analysis
| Accession | Description (Gene name) | # Unique Peptides | Sequence coverage (%) | Score |
|---|---|---|---|---|
| Identified only in LRB, all 4 replicate runs, or in 3 (*) | ||||
| AXI94710 | IMP cyclohydrolase PurH (DU507_09415) | 14 | 48.9 | 125.54 |
| AXI95264 | NAD-dependent epimerase (DU507_12610) | 07 | 60.1 | 87.82 |
| AXI94993 | β-hydroxyacyl-ACP dehydratase (DU507_11075) | 02 | 22.1 | 5.64 |
| AXI95459 | Histidine phosphatase (DU507_13760) | 02 | 13.1 | 58.06 |
| AXI94334 | LysR family regulator (DU507_07430) | 05 | 25.8 | 99.43 |
| AXI95425 | Polyphosphate kinase (DU507_13565) | 06 | 11.9 | 21.35 |
| AXI94967 | DNA-methyltransferase, PglX (DU507_10940) | 02 | 2.3 | 2.93 |
| AXI94719 | Ribonucleotide mutase, PurE (DU507_09460) | 02 | 15.4 | 36.82 |
| AXI94989 | FabK reductase (DU507_11055) | 02 | 7.4 | 11.75 |
| AXI94983 | Acetyl-CoA carboxylase (DU507_11025) | 02 | 9.6 | 49.41 |
| AXI94985 | Acetyl-CoA carrier protein, AccB (DU507_11035) | 04 | 60.1 | 49.61 |
| AXI93150 | N-acetyltransferase, DapD (DU507_0580) | 04 | 18.8 | 12.55 |
| AXI95905 | Hsp20 family protein (DU507_14615) | 04 | 37.0 | 27.01 |
| AXI93646 | HAD family hydrolase (DU507_03425) | 02 | 9.10 | 23.24 |
| AXI94200 | SAM-Methyltransferase, RsmH (DU507_06700) | 04 | 17.3 | 42.79 |
| AXI93364 | Glycosyltransferase (DU507_01785) | 02 | 4.1 | 6.15 |
| AXI93102 | Dehydrogenase family protein (DU507_00310) | 06 | 15.6 | 16.51 |
| AXI94787 | Hypothetical protein (DU507_09935) | 02 | 10.9 | 5.20 |
| AXI93153 | Diaminopimelate epimerase (DU507_00610) | 02 | 7.8 | 7.67 |
| AXI94630 | RNA methyltransferase (DU507_08980) | 01 | 8.3 | 6.26 |
| AXI94986 * | Beta-ketoacyl-synthase, FabF (DU507_11040) | 05 | 27.4 | 41.76 |
| AXI93317 * | Oxidoreductase (DU507_01510) | 05 | 36.5 | 48.86 |
| AXI94988 * | ACP S-malonyltransferase (DU507_11050) | 01 | 5.9 | 2.86 |
| AXI93363 * | Glycosyltransferase (DU507_01780) | 03 | 7.5 | 4.92 |
| AXI93708 * | Hypothetical protein (DU507_03780) | 01 | 14.8 | 2.97 |
| AXI93059 * | DNA topoisomerase, GyrB (DU507_00025) | 02 | 2.8 | 2.50 |
| Identified: in LRB, in all 4 replicate runs, or in 3 (*); in RB3S, 1 replicate, and at lower abundance | ||||
| AXI95119 | SAM- methyltransferase (DU507_11795) | 03 | 23.2 | 8.21 |
| AXI93816 | CutC (DU507_04540) | 02 | 19.3 | 12.35 |
| AXI94228 | N-acetyltransferase (DU507_06850) | 01 | 2.5 | 3.60 |
| AXI93870 | YvcK (DU507_04840) | 02 | 6.1 | 3.07 |
| AXI95791 | Hydrolase (DU507_03460) | 05 | 28.9 | 13.23 |
| AXI94021 | Hypothetical protein (DU507_05690) | 03 | 12.0 | 10.51 |
| AXI94794 | Hydrolase (DU507_09985) | 03 | 19.0 | 12.48 |
| AXI94133 | SufB (DU507_06315) | 04 | 12.3 | 46.28 |
| AXI95434 | tRNA-ligase, TrpS (DU507_13610) | 06 | 26.6 | 21.24 |
| AXI93198 | PTS sugar transporter (DU507_00850) | 05 | 60.6 | 46.06 |
| AXI93676 | Nitroreductase (DU507_03605) | 03 | 14.6 | 11.51 |
| AXI94984 | Dehydratase, FabZ (DU507_11030) | 06 | 43.2 | 71.44 |
| AXI94979 * | SAM-Methyltransferase (DU507_11005) | 02 | 6.9 | 24.3 |
| AXI94361 * | Fibrinogen-binding protein (DU507_07565) | 01 | 3.9 | 20.56 |
| AXI94970 * | BrxC (DU507_10955) | 03 | 3.6 | 7.92 |