Table 3B:

Proteins expressed at relatively higher level in RB3S identified by LFQ)

Accession	Description (Gene name)	# Unique Peptides	Sequence coverage (%)	Score
Identified only in RB3S all 4 replicate runs, or in 3 (*)
AXI93596	Ribosomal protection protein (DU507_03130)	06	15.4	18.34
AXI95252	Hypothetical protein (DU507_12550)	04	54.5	54.50
AXI94936	ABC transporter (DU507_10780)	02	5.4	3.15
AXI95307	Ribosomal protein L30 (DU507_12850)	02	50.8	45.80
AXI93974	PHB domain protein (DU507_05405)	03	11.0	7.00
AXI95670	N-acetyltransferase (DU507_14915)	04	33.5	31.30
AXI94116	F0F1 ATP synthase (DU507_06210)	01	23.1	42.52
AXI93353	Beta-galactosidase (DU507_01720)	04	6.7	8.31
AXI94637	DUF177 protein (DU507_09025)	02	19.2	3.56
AXI94581	Primosomal protein N (DU507_08725)	03	5.3	5.65
AXI95292	Transcriptional regulator (DU507_12775)	01	7.9	8.34
AXI94294	rRNA pseudouridine synthase (DU507_07220)	02	10.5	4.49
AXI94566	ABC transporter (DU507_08650)	03	17.0	21.52
AXI94206 *	FtsA (DU507_06735)	01	2.9	3.00
AXI94779 *	Hypothetical protein (DU507_09860)	02	14.9	11.37
AXI95002 *	Transcriptional regulator (DU507_11130)	01	15.5	21.89
AXI94267 *	Pyrophosphohydrolase (Du507_07080)	03	39.6	20.72
AXI94077 *	Endonuclease (DU507_05990)	01	3.5	31.74
AXI93523 *	Hydrolase (DU507_02735)	02	16.8	5.94
AXI95101 *	pTs sugar transporter (DU507_11685)	02	24.1	6.08
Identified: in RB3S, 4 replicate runs, or in 3 (*); in LRB, 1 replicate, and at lower abundance
AXI93697	NAD-dependent malic enzyme (DU507_03725)	05	17.5	21.56
AXI94076	Monooxygenase (DU507_05985)	01	18.9	10.75
AXI94282	Phosphodiesterase (DU507_07160)	02	4.3	3.86
AXI94573	Ribosomal protein L28 (DU507_08685)	02	24.6	3.28
AXI94564	Permease (DU507_08640)	01	3.0	4.05
AXI95668	ABC transporter (DU507_14900)	02	18.7	8.18
AXI94619	Iron-sulfur cluster biosynthesis protein	02	24.2	5.38
AXI94680	Methyltransferase TrmB (DU507_09245)	03	12.6	6.44
AXI94277 *	Ribonuclease Z (DU507_07130)	02	10.3	34.97