Appendix 1—table 2. Sequences of DNA oligonucleotides used to construct substrates for FRET scheme 2.
| Substrate | Oligo name | Sequence | |
|---|---|---|---|
| Double flap | P18mmt | 5'- | ACTTGAGAGCCGTATGAg |
| T33Y | 3'-BT10- | TGAACTCTCGGCATACTGGTAAYGGTAGCGTGC −5' | |
| D16 | ttCCATTACCATCGCACG −3' | ||
| Mixed flap | P18 | 5'- | ACTTGAGAGCCGTATGAC |
| T33Y | 3'-BT10- | TGAACTCTCGGCATACTGGTAAYGGTAGCGTGC −5' | |
| D16 | ttCCATTACCATCGCACG −3' | ||
| Downstream flap | P18 | 5'- | ACTTGAGAGCCGTATGAC |
| T33Y | 3'-BT10- | TGAACTCTCGGCATACTGGTAAYGGTAGCGTGC −5' | |
| D16mmt | ttgCATTACCATCGCACG −3' | ||
| Primer/template | P1 | 5'- | ACTTGAGAGCCGTATG |
| T33Y | 3'-BT10- | TGAACTCTCGGCATACTGGTAAYGGTAGCGTGC −5' | |