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. 2021 Mar 11;11:5676. doi: 10.1038/s41598-021-84956-6

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© This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Alignment of C. jejuni Field Isolate Genome Assemblies. The SPAdes (Panel A) and Unicycler (Panel B) genome assemblies for C. jejuni isolates R4B202 and R4B208 were aligned using the ProgressiveMauve alignment tool. The SPAdes alignments were reordered 13 times in an iterative process. The colored blocks represent homologous regions and the nucleotide identity is represented as a graph within the blocks. Vertical red lines denote contig boundaries. Sequence blocks above the midline represent the forward DNA strand, while blocks below the midline represent the reverse strand to show sequence inversions.