Table 1:

Summary of repeat sequence properties in the genome assembly

Class	Subclass	Type	No. of families	No. of repeats	Length (Mb)	Percent of genome
Class I TEs, retroelements	LTR-RT	Copia	353	45,194	22.8	3.0
		Gypsy	1,223	125,773	153.9	20.2
		Other	824	90,110	57.8	7.6
	LINE	I	17	3,040	1.5	0.2
	SINE		3,790	181,505	30.6	4.0
Class II TEs, DNA transposons	TIR	CACTA	348	42,737	7.4	1.0
		Mutator	34	8,493	1.8	0.2
		PIF	120	13,973	2.4	0.3
		Tc1	896	124,252	21.5	2.8
		hAT	93	13,097	2.5	0.3
	Helitron	Helitron	313	104,271	21.6	2.8
Tandem repeats	SSRs			133,570	5.9	0.8
Unclassified repeats	(Repbase)				48.0	6.3
	Total				329.8	49.7